Related by context. All words. (Click for frequent words.) 73 phylogenetic analysis 72 microsatellite markers 72 #S rRNA 71 #S rRNA gene 69 #S rDNA 69 orthologs 69 indels 69 Phylogenetic analysis 69 cDNA libraries 69 microRNA expression 69 splice variants 68 mitochondrial genomes 68 immunohistochemical analysis 68 Phylogenetic analyzes 68 differentially expressed genes 68 cDNAs 68 somatic mutations 68 proteomic analysis 68 genetic loci 67 orthologous 67 transcriptomes 67 mitochondrial DNA mtDNA 67 sequence homology 67 VNTR 67 nucleotide sequence 67 phylogenies 67 allele frequencies 67 quantitative trait loci 67 bacterial genomes 67 ribosomal DNA 66 splice junctions 66 transcriptional profiling 66 indel 66 phylogenetically 66 MLH1 66 nucleotide substitutions 66 missense mutations 66 ChIP chip 66 miRNA expression 66 primate genomes 66 polyploid 66 cis regulatory 66 chromosomal regions 66 differential gene expression 66 previously uncharacterized 66 mutational analysis 66 Transcriptome 66 cDNA microarray 66 paralogs 66 gene duplications 66 Multivariate analysis 65 cytochrome b 65 Cytogenetic 65 intergenic regions 65 transcriptomic 65 BAC clones 65 logistic regressions 65 immunohistochemical 65 proteomic analyzes 65 PFGE 65 proteomes 65 nucleotide sequences 65 genes differentially expressed 65 previously undescribed 65 Immunohistochemistry 65 vitro experiments 65 Microarray analysis 65 fungal genomes 65 microarray gene expression 65 phenotypic traits 65 morphological traits 65 bioinformatic analysis 65 neuropathologic 65 Homology 64 Immunohistochemical staining 64 experimentally validated 64 amino acid sequences 64 molecular phylogenetic 64 phylogeographic 64 sequenced genomes 64 gene expression microarrays 64 transcriptome sequencing 64 microsatellite loci 64 microarray experiments 64 qRT PCR 64 Alu elements 64 phylogenetic trees 64 interobserver 64 Univariate 64 RRM1 64 eukaryotic genomes 64 intergenic 64 hypermethylated 63 clinicopathological 63 bisulfite sequencing 63 gene expression profiles 63 ultrastructural 63 phenotypic variation 63 mitochondrial genome sequence 63 constitutively expressed 63 susceptibility loci 63 mtDNA sequences 63 microarray analysis 63 differentially expressed proteins 63 linkage disequilibrium 63 haplotypes 63 genomewide 63 genomewide association study 63 RFLP 63 methylation patterns 63 RefSeq 63 Histopathologic 63 situ hybridization 63 TCF#L# gene 63 synteny 63 Macaca mulatta 63 genotypic 63 biochemical assays 63 transcriptome analysis 63 microdeletions 63 ChIP seq 63 immunostaining 63 segmental duplication 63 genomic alterations 63 silico prediction 63 Immunohistochemical analysis 63 chromosome #q# [001] 63 ribosomal RNA rRNA 63 metagenomes 63 A. thaliana 62 promoter methylation 62 chromosome rearrangements 62 M. pneumoniae 62 rRNA 62 QTL mapping 62 orthologous genes 62 transcriptome profiling 62 inbred strains 62 Western blotting 62 ORFs 62 gene rearrangements 62 vertebrate genomes 62 linkage disequilibrium LD 62 inferential statistics 62 multiple logistic regression 62 gene loci 62 mutant allele 62 Genotypes 62 subcellular localization 62 intraobserver 62 morphologically 62 genome rearrangements 62 transgenic mouse models 62 TMPRSS2 ERG fusion 62 Meta analyzes 62 Phylogenetic 62 histopathologic 62 ALK mutations 62 Phenotypic 62 array CGH 62 autosomal 62 histone modifications 62 #p#.# [001] 62 RNA seq 62 KRAS BRAF 62 quantitative RT PCR 62 virulence genes 62 mtDNA mutations 62 SLITRK1 62 familial aggregation 62 loci 62 tyrosine phosphorylation 62 RNA sequences 62 methylated DNA 62 chromatin immunoprecipitation ChIP 62 HLA loci 62 neuroimaging studies 62 segmental duplications 62 chloroplast genome 62 allelic 62 non coding RNA 62 logistic regression analyzes 62 gene amplification 62 clinicopathologic 62 transcriptional regulation 62 QTLs 62 taxa 62 immunohistochemical staining 62 morphologic 62 haplotype map 62 yeast genome 62 maternally inherited 62 inhibin B 62 linear regressions 62 flow cytometric analysis 62 Genotypic 62 Histologic 62 etiologic 62 causative mutation 62 cDNA library 62 DNA demethylation 62 homologies 62 histopathological 62 Haplotype 62 AFLP 62 rs# [004] 61 DGGE 61 genotype phenotype 61 operons 61 hierarchical clustering 61 frameshift mutation 61 germline mutations 61 miRNA sequences 61 ncRNAs 61 ortholog 61 BRAF V#E 61 intronic 61 COL#A# 61 H#K#me# 61 #S ribosomal RNA 61 morphometric 61 gene expression patterns 61 DNA methylation patterns 61 neuroanatomical 61 coexpression 61 Prox1 61 heterozygotes 61 RNA polymerases 61 PCR RFLP 61 tissue microarrays 61 metazoans 61 homology 61 haplogroups 61 SNP arrays 61 tumorigenicity 61 clades 61 PTPN# 61 viral genomes 61 mammalian genomes 61 gene expression microarray 61 metabolomic profiles 61 mRNA expression 61 MALDI TOF MS 61 amplicons 61 RT PCR assay 61 Arabidopsis genome 61 archaeal 61 Gene Ontology 61 immunoblotting 61 genetic relatedness 61 morphological characteristics 61 multigene 61 aCGH 61 mtDNA sequence 61 malaria parasite genome 61 TMPRSS2 ERG 61 Multiple logistic regression 61 Raman spectra 61 #q#.# [002] 61 genomic loci 61 Arabidopsis genes 61 chromosomal anomalies 61 K ras mutations 61 LRAT 61 #S rRNA genes 61 RNA transcripts 61 #p# [003] 61 siRNA knockdown 61 distinct lineages 61 Supplementary Table 61 introgression 61 Histopathological 61 #p#.# [002] 61 CpG island 61 S. maltophilia 61 paraffin embedded tissue 61 karyotypes 61 bivariate 61 differentially regulated 61 EEG recordings 61 MLL2 61 monophyletic 61 chromosome #q#.# [001] 61 Aspergillus nidulans 60 PIB PET 60 diploid genome 60 cytosine methylation 60 Liver biopsies 60 noncoding 60 genomically 60 chromosome aberrations 60 directed mutagenesis 60 phylogenetic relationships 60 genetic locus 60 dbSNP 60 striated muscle 60 hypomethylation 60 genomic profiling 60 telomere lengths 60 immunological responses 60 positional cloning 60 substrate specificity 60 deacetylation 60 chromosomal aberrations 60 immunofluorescent 60 fig. S1 60 phylogenetic tree 60 gene locus 60 genomewide association studies 60 noncoding RNAs 60 breast cancer subtypes 60 evolutionary relatedness 60 chimp genomes 60 epigenetic modification 60 Bonferroni correction 60 HAR1 60 vivo experiments 60 GPx 60 KCNQ1 60 prokaryotic 60 Single Nucleotide Polymorphisms SNPs 60 rifamycins 60 Cathepsin B 60 conserved sequences 60 de novo mutations 60 chromatin immunoprecipitation 60 homozygosity 60 KEGG 60 SNP rs# [001] 60 phylogenetic 60 ncRNA 60 mitochondrial gene 60 clefting 60 molecular subtypes 60 somatic mutation 60 phenotypic characteristics 60 allelic variants 60 ESTs 60 autism susceptibility genes 60 epistasis 60 causative mutations 60 sCJD 60 histopathologic diagnosis 60 TOP2A 60 phylogeny 60 PCR primers 60 comparative genomic hybridization 60 causal variants 60 ribosomal RNA 60 RT qPCR 60 Clusterin 60 #q#.# [001] 60 extramedullary 60 comparative genomic 60 genetic polymorphism 60 body louse genome 60 coding sequences 60 fluoroquinolone resistance 60 perilipin 60 metabolite concentrations 60 metaanalysis 60 genomic deletions 60 IL#B 60 Single Nucleotide Polymorphism 60 mass spectrometric 60 chimpanzee genomes 60 Histological 60 pseudogenes 60 chromosome #p#.# 60 heterologous expression 60 gene polymorphisms 60 spontaneous mutations 60 Serological 60 C. jejuni 60 Sanger sequencing 60 susceptibility locus 60 #q# deletion 60 subcellular compartments 60 immunofluorescence microscopy 60 quasispecies 60 hamartomas 60 oligonucleotide microarray 60 Mutagenesis 60 genotyping arrays 60 pathologic examination 60 chromosome #q#.# [002] 60 Comparative genomics 60 ant genomes 60 uniparental 60 microglial 60 genomic sequence 60 homologous sequences 60 Trichophyton rubrum 60 HLA DQ 60 scintigraphic 60 chest radiographs 60 genomic rearrangements 60 genome annotation 60 multivariate analyzes 60 prion gene 60 histopathologic examination 60 coding exons 59 ribosomal protein 59 progranulin gene 59 histological examination 59 KIAA# 59 Logistic regression 59 meiotic recombination 59 maize genome 59 Regression analyzes 59 chromosome #p# [002] 59 phenotypic differences 59 variant allele 59 mycobacterial 59 Linear regression 59 sensu lato 59 histocompatibility 59 AVPR1A 59 recombination hotspots 59 circulating endothelial cells 59 distinct subtypes 59 amyloidogenic 59 biochemical abnormalities 59 lymphoblastoid cell lines 59 multiplex PCR 59 DHPLC 59 Confocal microscopy 59 SHANK3 59 untranslated regions 59 mRNA transcripts 59 Prevotella 59 HLA DQ2 59 RNA binding 59 ESR1 59 Y STR 59 Plasmodium vivax 59 chromosome #q 59 PARP inhibition 59 familial clustering 59 C#Y 59 chromosome #q# [002] 59 CHD7 59 multiple linear regression 59 chromosomal rearrangement 59 trinucleotide 59 MTT assay 59 transcriptome 59 enterotypes 59 X chromosome inactivation 59 #F FDG PET 59 amplicon 59 Single Nucleotide Polymorphisms 59 evolvability 59 microdeletion 59 multivariate Cox 59 ADRB2 59 JCSG 59 Salmonella enterica 59 DNA rearrangements 59 x ray crystallographic 59 PIK3CA 59 paternally inherited 59 extracellular domains 59 amino acid substitutions 59 microsatellite instability 59 clade B 59 protein ligand 59 KRAS mutations 59 Serologic 59 NR#A# gene 59 microbial genome 59 citrate synthase 59 immunofluorescence 59 generalized vitiligo 59 CAG repeats 59 Y chromosomal 59 homozygote 59 comparative genomic analysis 59 heritable traits 59 transcriptional profiles 59 homologous genes 59 L. pneumophila 59 semiquantitative 59 multivariable analysis 59 serologic testing 59 fig. S4 59 GenBank accession 59 PALB2 59 putative biomarkers 59 SCN5A 59 vivo assays 59 miRNAs miR 59 Univariate analysis 59 methylation markers 59 CCL#L# 59 PCR amplified 59 linear regression analyzes 59 pathogenic mutations 59 At#g# 59 exomes 59 NOD mouse 59 thyroid carcinoma 59 CD# expression [001] 59 quantitative PCR 59 monogenic 59 mitochondrial genome 59 Antigenic 59 allelic variation 59 postnatal foreskin fibroblasts 59 A. niger 59 contigs 59 aneuploidies 59 NF1 gene 59 MSH2 59 isotype 59 codon usage 59 fruitfly Drosophila 59 reaction PCR 59 aberrant methylation 59 PBMCs 59 ZNF# 59 SAXS 58 S. cerevisiae 58 CNTNAP2 58 microcephalin 58 HLA alleles 58 Bayesian inference 58 heritable variation 58 genomic sequences 58 cDNA sequencing 58 alternatively spliced 58 posttranslational modifications 58 ChIP Seq 58 Poisson regression 58 APOE genotype 58 metazoan 58 hepatoma 58 promoter hypermethylation 58 immunofluorescence staining 58 MRSA isolates 58 E. histolytica 58 coevolution 58 enolase 58 reaction RT PCR 58 nucleolar 58 KLF4 58 amphioxus 58 epitope mapping 58 rs# [001] 58 Replikin 58 HRCT 58 lymphoid cells 58 SCN1A 58 enzyme inhibition 58 papillary renal cell carcinoma 58 histologic diagnosis 58 Human Leukocyte Antigen 58 TIMP 1 58 proteolytic cleavage 58 pseudogene 58 cell lysate 58 S. enterica 58 transfection efficiency 58 alkaline phosphatase ALP 58 siRNA duplexes 58 MMP# 58 cellularity 58 miRNA expression profiles 58 spontaneous mutation 58 CpG islands 58 Eukaryotes 58 hemagglutinin gene 58 DEAR1 58 SNP rs# [002] 58 N glycan 58 hypervariable 58 p# biomarker 58 CRISPR Cas 58 Xenopus 58 P. patens 58 karyotype 58 histone acetylation 58 CRISPR 58 logistic regression analysis 58 ENMD # 58 subfamilies 58 chromosomal rearrangements 58 histologic findings 58 single nucleotide polymorphism 58 IgA deficiency 58 genomic variation 58 molecular biomarkers 58 serum antibodies 58 mechanistic studies 58 protein phosphorylation 58 #q# [001] 58 functional annotation 58 chromosomal translocations 58 flow cytometric 58 splice variant 58 CSHL scientists 58 sequenced genome 58 mammalian organisms 58 nucleotide substitution 58 Figure 2C 58 chordate 58 synthases 58 phenotyping 58 monozygotic 58 E. faecalis 58 histologic examination 58 CYP#D# gene 58 seropositivity 58 MECP2 gene 58 single celled yeast 58 potent inhibition 58 intercellular signaling 58 M. genitalium 58 polynucleotides 58 Immunohistochemical 58 DLC1 58 C#T [002] 58 heterozygosity 58 Supplementary Fig 58 fission yeast 58 CagA 58 operon 58 mRNA molecules 58 UGT#A# * 58 Geochemical analyzes 58 Replikin Count 58 immunized mice 58 genetic polymorphisms 58 ERalpha 58 Electrophysiological 58 Microscopic examination 58 histopathological examination 58 eukaryote 58 bacterial isolates 58 artifactual 58 dynamics simulations 58 comparative genomic hybridization CGH 58 nested PCR 58 coding genes 58 chromosomal DNA 58 vimentin 58 univariate 58 modifier genes 58 inactivating mutations 58 clonal expansion 58 meta regression 58 ERK signaling 58 zebrafish genome 58 dysbindin 58 immunocytochemistry 58 serologic 58 xenograft models 58 immunohistochemistry IHC 58 HepG2 cells 58 histone H4 58 deuterostomes 58 cytologic 58 antimicrobial susceptibility 58 fraternal twin pairs 58 Leptospira 58 fig. S2 58 microarray datasets 58 condensin 58 CDK4 58 Bioinformatic 58 Sanger Sequencing 58 autocorrelation 58 phylogenetics 58 OCT4 58 centromeric 58 renal cell carcinomas 58 demyelinating 58 kDa protein 58 rRNA gene 58 denaturing gradient gel electrophoresis 58 drug metabolizing enzymes 58 Alleles 58 neutralizing antibody responses 58 chromatogram 58 RQ PCR 58 prognostic markers 58 HLA typing 58 ploidy 58 PrPSc 58 Pearson correlation coefficients 58 PML RARA 58 TGFBR1 * 6A 58 mtDNA 58 cytological 58 Fig. 1b 58 kilobases 58 3'UTR 58 exon intron 58 R#W [002] 58 protein isoforms 58 morphologically distinct 57 Polymorphism 57 androgen receptor gene 57 serine threonine kinase 57 studies GWAS 57 transgenic rats 57 Polymorphisms 57 sputum specimens 57 microbial genomes 57 electrophysiological recordings 57 chordates 57 potent antitumor activity 57 sporadic ALS 57 dinucleotide 57 MGUS 57 colocalization 57 mosaicism 57 HLA DRB1 57 genes encoding 57 immunoreactive 57 bivariate analysis 57 genetic aberrations 57 LPA gene 57 molecular biomarker 57 randomized controlled trials RCTs 57 cerebral cortical 57 electrophysiologic 57 cytogenetic 57 VeraCode 57 multivariate regression analysis 57 oligonucleotide microarrays 57 N. gonorrhoeae 57 functional polymorphism 57 agarose gel electrophoresis 57 meta analytic 57 rDNA 57 metaplasia 57 penetrance 57 p# activation 57 Morphological 57 plastid 57 δ 57 toxicological studies 57 hemoglobins 57 haploid 57 NFKBIA 57 intracellular bacteria 57 clonally 57 outbred 57 K#R [002] 57 CYP #D# 57 radiocarbon tests 57 distantly related species 57 homologs 57 urine cytology 57 MC1R gene 57 etiologic agent 57 ERBB2 57 heterochromatic 57 Paleobiology Database 57 H#N# isolates 57 cnidarians 57 serologically 57 LRP5 57 MAPCs 57 nasopharyngeal swabs 57 herpesviruses 57 Histologically 57 TMEM#B 57 comparative genomics 57 transcriptomics 57 transgene expression 57 gene inactivation 57 ultraconserved elements 57 P. gingivalis 57 petrological 57 ciliated 57 Wwox 57 Drosophila genome 57 Fig. 2a 57 tumor biopsies 57 cell lysates 57 Multivariable logistic regression 57 5 hmC 57 APOL1 57 anterior pituitary 57 DNA sequences 57 macaque genome 57 airway hyperresponsiveness 57 A. gambiae 57 variant alleles 57 morphometric analysis 57 uncharacterized genes 57 sexually dimorphic 57 antisense inhibition 57 V#F mutation 57 Nocardia 57 microRNA biomarkers 57 transgenic mice expressing 57 proinflammatory mediators 57 FDG-PET/CT 57 hypermethylation 57 dizygotic twins 57 ELISA assays 57 biopsy specimens 57 manually curated 57 clinico pathological 57 genotyping assays 57 haplotyping 57 T1 weighted images 57 Sequencing Systems 57 polymerase chain reactions 57 immunoblot 57 ELISpot 57 genetic lineages 57 TSC1 57 mammalian fatty acid 57 LIS1 57 mutant strains 57 FGFR2 57 GBA mutations 57 immunoreactivity 57 serologic tests 57 normal karyotype 57 situ hybridisation 57 tissue microarray 57 BARD1 57 homodimers 57 Jhdm2a 57 histologic subtypes 57 chromosome #p# [001] 57 mammographic density 57 miRBase 57 rRNA genes 57 Estrogen Receptor 57 somites 57 Regression analysis 57 histone H3 57 variant rs# 57 alpha7 57 Chromosomal 57 LRRK2 gene 57 epigenetic regulation 57 constitutively active 57 Solexa sequencing 57 miRNA assays 57 S. Typhimurium 57 GSTP1 57 computational geometry 57 ABCB1 gene 57 C. albicans 57 short hairpin RNAs 57 electron microscopic 57 miRNA genes 57 MALDI MS 57 nucleosome positioning 57 Corynebacterium 57 logistic regression models 57 neuroligins 57 neurexins 57 oseltamivir resistance 57 peripheral blood mononuclear 57 BRCA1 BRCA2 57 homodimer 57 CIN2 + 57 HER2 expression 57 NPM1 mutations 57 Infectivity 57 genetic variability 57 ABCB1 57 ligand binding 57 CpG 57 synaptic proteins 57 eukaryotic 57 EGFR expression 57 PRNP 57 fluorescently labeled 57 physico chemical 57 c Myb 57 immunochemical 57 MAPK pathway 57 microbiomes 57 histopathologic findings 57 Kruskal Wallis test 57 missense 57 Mutational 57 thyroglobulin 57 C. neoformans 57 soluble proteins 57 chromatograms 57 affinity purification 57 miRs 57 X. laevis 57 histone modification 57 biomarker identification 57 Micromonas 57 c KIT 57 genetic recombination 57 ultrastructure 57 epigenetic changes 57 EBNA1 57 serine protease 57 vivo preclinical studies 57 epigenetically 57 magnetic susceptibility 57 Eukaryotic 57 laparoscopic radical nephrectomy 57 hyperplastic 57 evolutionarily conserved 57 Ehrlichia 57 SNCA 57 telomeric 57 CISH 57 Histological examination 57 HLA B# 57 lysates 57 rs# [002] 57 evolutionary lineage 57 mRNA sequences 57 gene sequences 57 Nucleotide 57 histologic 56 uPAR 56 ROC curves 56 Deinococcus 56 bilaterians 56 metabolomic profiling 56 transgenic mouse model 56 genomic proteomic 56 anthropometric measurements 56 thermodynamic stability 56 nucleic acid sequence 56 subtyping 56 bronchial epithelial cells 56 peptide sequences 56 genomic biomarker 56 DNA deoxyribonucleic acid 56 insertion deletion 56 multivariable logistic regression 56 lognormal 56 recombinants 56 S. pombe 56 MenSCs 56 CDKN2A 56 Eg5 56 Leydig cell 56 clinicopathological features 56 phenotypes 56 murine models 56 serological 56 echogenic foci 56 NNRTI resistance 56 KRAS oncogene 56 Dopaminergic 56 MYH9 56 astrocytic 56 morphological 56 cynomolgus macaques 56 lincRNA 56 Multivariate analyzes 56 tiny roundworm 56 RNase L 56 proton MR spectroscopy 56 FUS1 56 FGFs 56 TRAF1 C5 56 convergent validity 56 B7 H3 56 CCR5 delta# 56 bone scintigraphy 56 metagenomic 56 UCRs 56 Multivariate logistic regression 56 PCR assay 56 filoviruses 56 MTHFR 56 antiangiogenic activity 56 Haplogroup 56 EUS FNA 56 polyploidy 56 terrestrial vertebrates 56 WGD 56 C1q 56 honeybee genome 56 neural progenitor 56 isotypes 56 bioinformatic 56 pleiotropy 56 oligonucleotide arrays 56 replicase 56 NOD SCID mice 56 enzyme immunoassay EIA 56 cellular prion protein 56 missense mutation 56 gDNA 56 Leukemias 56 conditional logistic regression 56 prognostic significance 56 immunocompetent