Related by context. All words. (Click for frequent words.) 73 phylogenetic analyzes 70 microsatellite markers 69 mitochondrial DNA mtDNA 69 #S rRNA 68 Phylogenetic analysis 68 mitochondrial genomes 66 proteomic analysis 66 orthologs 66 transcriptional profiling 66 #S rRNA gene 65 phylogenetic tree 65 primate genomes 65 Phylogenetic analyzes 65 splice junctions 64 mammalian genomes 64 sequenced genomes 64 nucleotide sequence 64 positional cloning 64 #S rDNA 64 immunohistochemical analysis 63 PCR RFLP 63 introgression 63 phylogenetic 63 bacterial genomes 63 viral genomes 63 Phylogenetic 63 fungal genomes 63 quantitative trait loci 63 X chromosome inactivation 63 transcriptome sequencing 63 PFGE 63 virulence genes 63 Bayesian inference 62 VNTR 62 sequenced genome 62 orthologous 62 SARS CoV 62 microarray gene expression 62 CRISPR Cas 62 genomic sequence 62 archaeal 62 somatic mutations 62 proteomes 62 molecular phylogenetic 62 chimp genomes 62 nucleotide sequences 62 genomewide association study 62 RNA seq 62 genotypic 61 phylogenetic trees 61 phylogenetically 61 hypervariable 61 Arabidopsis genome 61 mitochondrial genome 61 RFLP 61 chromosome rearrangements 61 distinct lineages 61 ant genomes 61 cytochrome b 61 sequence homology 61 mitochondrial genome sequence 61 haplotype map 61 paralogs 61 previously undescribed 61 genetic loci 61 phylogenies 61 immunohistochemical 61 previously uncharacterized 61 EMBL scientists 61 indels 61 genetic recombination 60 malaria parasite genome 60 polyploid 60 prion gene 60 subcellular localization 60 ribosomal DNA 60 TCF#L# gene 60 Single Nucleotide Polymorphisms SNPs 60 mtDNA sequences 60 orthologous genes 60 genomic sequences 60 cDNA microarray 60 Comparative genomics 60 differentially expressed genes 60 genetic lineages 60 experimentally validated 60 BAC clones 60 metazoan 60 proteomic analyzes 60 genomic profiling 60 cDNA libraries 60 vitro experiments 60 phylogenetic relationships 60 phylogenetics 60 evolutionary relatedness 60 genetic relatedness 60 mitochondrial gene 60 mtDNA mutations 60 ChIP seq 60 MALDI TOF MS 60 ribozyme 60 serological 60 DGGE 59 genome annotation 59 #S rRNA genes 59 miRNA expression profiles 59 operons 59 ChIP chip 59 comparative genomics 59 massively parallel sequencing 59 genomewide 59 Y STR 59 Alu elements 59 BCL6 gene 59 clades 59 CRISPR 59 miRNA expression 59 phylogeny 59 DNA deoxyribonucleic acid 59 shotgun sequencing 59 amino acid sequences 59 gene rearrangements 59 bioinformatic analysis 59 nucleotide substitution 59 nucleotide substitutions 59 gel electrophoresis 59 phenotypic variation 59 gene sequences 59 synteny 59 Phenotypic 59 microarray analysis 59 microRNA expression 59 etiologic 59 miRNA sequences 59 transcriptomic 59 cDNAs 59 immunofluorescent 59 epigenetic modification 59 autosomal 59 intergenic regions 59 transcriptome profiling 59 honeybee genome 59 Daphnia genome 59 indel 59 chromatin immunoprecipitation 59 transcriptomes 59 chromosomal DNA 59 centromeres 59 heterologous expression 59 noncoding 59 Multivariate analysis 59 clade B 59 V. cholerae 59 microarray experiments 59 chromatin immunoprecipitation ChIP 59 Microscopic examination 59 gene amplification 59 metagenomic 59 nucleosome positioning 58 Y chromosomal 58 filoviruses 58 Neandertal DNA 58 inbred strains 58 differentially expressed proteins 58 platypus genome 58 immunoblotting 58 genomewide association studies 58 chordate 58 mRNA transcripts 58 yeast genome 58 vivo assays 58 NOD mouse 58 M. genitalium 58 prokaryotic 58 maize genome 58 RNA polymerases 58 Western blotting 58 phylogeographic 58 prion infection 58 fruitfly Drosophila 58 gene expression microarray 58 mutational analysis 58 coexpression 58 biochemical assays 58 chloroplast genome 58 mitochondrial DNA sequences 58 herpesviruses 58 monophyletic 58 intergenic 58 mtDNA 58 hemagglutinin gene 58 ORFs 58 genetic fingerprinting 58 multigene 58 fig. S1 58 serologic 58 RNA sequences 58 S. enterica 58 mass spectrometric 58 pyrosequencing 58 hypermethylated 58 mycobacterial 58 RefSeq 58 microbial genome 58 quantitative RT PCR 58 Mathematical modeling 58 Liver biopsies 58 Neanderthal fossils 58 T. brucei 58 epistasis 58 Macaca mulatta 58 orangutan genome 58 eukaryote 58 5 hydroxymethylcytosine 58 S. Typhimurium 58 maternally inherited 58 poly dA 58 reassortant viruses 58 transcriptional profiles 58 array comparative genomic 57 tRNA genes 57 diploid genome 57 methylation patterns 57 situ hybridization 57 computational algorithms 57 colugos 57 recombination hotspots 57 Immunohistochemical analysis 57 sea urchin genome 57 quantitative proteomics 57 allele frequencies 57 epigenetic regulation 57 body louse genome 57 linkage disequilibrium 57 RNA transcripts 57 S. cerevisiae 57 Histopathologic 57 PCR primers 57 homologies 57 DNA demethylation 57 ultrastructural 57 genetic rearrangements 57 missense mutations 57 Trichophyton rubrum 57 metabolome 57 Karayiorgou 57 haploid 57 multiple logistic regression 57 Leptospira 57 H#N# isolates 57 mutant allele 57 haplotyping 57 A. thaliana 57 sCJD 57 splice variants 57 microcephalin 57 histone H4 57 ortholog 57 QTLs 57 FMDV 57 quasispecies 57 causative mutations 57 Genotypic 57 accelerator mass spectrometry 57 microbial genomes 57 olfactory receptor 57 transcriptome analysis 57 C. jejuni 57 glycan microarray 57 multiprotein complex 57 outer membrane proteins 57 logistic regression analyzes 57 siRNA knockdown 57 gene locus 57 DEAR1 57 CSHL scientists 57 morphometric 57 cynomolgus macaques 57 M. pneumoniae 57 intracellular bacteria 57 rDNA 57 S. maltophilia 57 eukaryotic genomes 57 dbSNP 57 methylation markers 57 E. histolytica 57 X inactivation 57 bacterial symbiont 57 postnatal foreskin fibroblasts 57 silico prediction 57 QTL mapping 57 haplotype 57 endogenous retrovirus 57 paternally inherited 57 Deinococcus 57 Raman spectra 57 HAR1 57 differential gene expression 57 Linear regression 57 lentiviruses 57 bisulfite sequencing 57 aCGH 57 X ray crystallographic 57 chimpanzee genome 57 SIVcpz 57 PrPSc 57 frameshift mutation 57 RT PCR assay 57 Meta analyzes 57 immunohistochemistry IHC 56 cis regulatory 56 cDNA sequencing 56 comparative genomic 56 correlational 56 situ hybridisation 56 Deoxyribonucleic acid DNA 56 P. patens 56 chromosomal regions 56 rRNA 56 oligonucleotide microarray 56 supertree 56 Corynebacterium 56 genomic alterations 56 Mycoplasma genitalium 56 Candida species 56 linear regressions 56 exome 56 neuroimaging studies 56 Haplotype 56 Trypanosoma brucei 56 KIAA# 56 pseudogenes 56 Cytogenetic 56 cDNA library 56 5 methylcytosine 56 directed mutagenesis 56 AFLP 56 Aspergillus nidulans 56 serovar 56 somatic mutation 56 haplogroups 56 gene loci 56 evolutionary lineage 56 non coding RNA 56 statistical correlations 56 molecular phylogeny 56 Venter genome 56 cytosine methylation 56 enterotypes 56 immunized mice 56 fluorescently tagged 56 tyrosine phosphorylation 56 eukaryotic cell 56 prion strains 56 maternal lineage 56 exomes 56 CHD7 56 metabolomic profiles 56 mammalian fatty acid 56 neutralizing antibody responses 56 methylated DNA 56 International HapMap Project 56 A. niger 56 allelic variation 56 homozygosity 56 Confocal microscopy 56 P. falciparum 56 HLA alleles 56 Dictyostelium 56 cDNA clone 56 Univariate 56 NF1 gene 56 Mendelian 56 logistic regression analysis 56 Apobec3 56 bacterial genome 56 Gene Ontology 56 contigs 56 genome rearrangements 56 genotype phenotype 56 inferential statistics 56 organism genome 56 lymphoblastoid cell lines 56 hammerhead ribozyme 56 histone modifications 56 Brucella abortus 56 isotopic analysis 56 radiocarbon tests 56 serologic tests 56 Woese 56 DHPLC 56 germline cells 56 P. gingivalis 56 Multiple logistic regression 56 gene duplications 56 mutant strains 56 lineages 56 endogenous retroviruses 56 genomic loci 56 transgenesis 56 array CGH 56 Salmonella enterica 56 coevolution 56 ultraconserved elements 56 lentivirus 56 intronic 56 telomere DNA 56 histopathological examination 56 nucleolar 56 electrophysiological recordings 56 coding sequences 56 neuroanatomical 56 Illumina Solexa 56 amino acid sequence 56 Y. pestis 56 homologous 56 A. gambiae 56 inbred mouse 56 ribosomal RNA 56 vertebrate genomes 56 epigenetic reprogramming 56 teleost fish 56 hominoid 56 centromeric 56 linkage disequilibrium LD 56 Homology 56 Hox gene 56 viral nucleic acids 56 GenBank accession 55 Electron microscopy 55 immunohistochemical staining 55 kilobase 55 genes differentially expressed 55 immunoblot 55 Serological 55 Sanger sequencing 55 PCR amplified 55 DNA polymerases 55 genetic locus 55 Immunohistochemical staining 55 replicon 55 chimpanzee genomes 55 bilaterians 55 Immunohistochemical 55 HLA loci 55 evolutionary conserved 55 cell lysate 55 Xenopus 55 thermophilum 55 T. gondii 55 computational geometry 55 electron micrographs 55 coding exons 55 microsatellite loci 55 sensu lato 55 CPEB 55 Rickettsia 55 fluorescently labeled 55 clade C 55 transgenic mouse models 55 chloroplast DNA 55 genetic markers 55 metagenomes 55 phenotypic expression 55 nucleoprotein 55 ncRNA 55 chromosome #q 55 PCR assay 55 hierarchical clustering 55 microsporidia 55 Microarray analysis 55 operon 55 MC1R gene 55 x ray crystallographic 55 SRY gene 55 C. neoformans 55 CNTNAP2 55 spectroscopic techniques 55 genetic sequences 55 PGCs 55 heterochromatic 55 Neanderthal genome sequence 55 PCR amplification 55 Serologic 55 ChIP Seq 55 gambiae 55 S. neurona 55 ESTs 55 HMPV 55 trypanosome 55 multiplex PCR 55 conserved sequences 55 segmental duplication 55 maternal lineages 55 phenotyping 55 TRIM5 55 genomic imprinting 55 reaction PCR 55 splice variant 55 molecular pathogenesis 55 ADRB2 55 laser capture microdissection 55 gene expression microarrays 55 chimeric gene 55 HLA typing 55 Dehalococcoides 55 Anopheles gambiae 55 MALAT1 55 ConclusionThis 55 heritable traits 55 progranulin gene 55 sexually dimorphic 55 At#g# 55 photon microscopy 55 alternatively spliced 55 superinfection 55 IgA deficiency 55 genomically 55 chromatid 55 faecal samples 55 fission yeast 55 tubercle bacillus 55 DNA methylation patterns 55 ultrastructure 55 serologically 55 murine leukemia virus 55 HCMV 55 chlamydial 55 microbiomes 55 phenotypic differences 55 zebrafish larvae 55 H5 strains 55 genetic sequencing 55 flow cytometric analysis 55 Histologic 55 imprinted genes 55 polymerase chain reactions 55 transposon 55 homologous genes 55 vitro studies 55 familial aggregation 55 #S ribosomal RNA 55 haplotypes 55 L. pneumophila 55 oligonucleotide microarrays 55 morphologically 55 Leishmania parasites 55 mammalian organisms 55 RT qPCR 55 Mycobacterium smegmatis 55 uncharacterized genes 55 Viral RNA 55 genomic deletions 55 Mycobacterium leprae 55 H#K#me# 55 RUNX3 55 substrate specificity 55 short hairpin RNAs 55 mitochondrial DNA 55 computational methods 55 microchimerism 55 homozygote 55 differentially regulated 55 Transcriptome 55 serological tests 55 viral genome 55 logistic regressions 55 multiple linear regression 55 BACcel ™ system 55 Micromonas 55 genetic heterogeneity 55 multivariate analyzes 55 E. faecalis 55 site directed mutagenesis 55 quantitative mass spectrometry 55 MAPCs 55 qRT PCR 55 pathogenic mechanisms 55 glycan 55 chimpanzee adenovirus 54 Prochlorococcus 54 metabolomic 54 segmental duplications 54 BARD1 54 nested PCR 54 conditional logistic regression 54 Borrelia 54 hMPV 54 microRNA genes 54 ncRNAs 54 vivax 54 Arabidopsis genes 54 clinicopathological 54 rifamycins 54 biosynthetic pathways 54 quantitative PCR 54 dual tropic 54 promoter methylation 54 immunocytochemistry 54 immunofluorescence 54 HLA B# 54 AVPR1A 54 mtDNA sequence 54 paramyxoviruses 54 immunofluorescence staining 54 karyotype 54 RRM1 54 comparative genomic analysis 54 metaanalysis 54 gene expression patterns 54 CCL#L# 54 endometrial stem cells 54 functional annotation 54 Six3 54 Solexa sequencing 54 clonal 54 Chlamydia pneumoniae 54 viral isolates 54 uniparental 54 woolly mammoth genome 54 metazoans 54 dynamics simulations 54 zebra finch genome 54 P. infestans 54 fig. S4 54 allelic 54 plastid 54 Neanderthal skeletons 54 nonpathogenic 54 SAXS 54 Mycobacterium bovis 54 #q#.# [002] 54 cDNA sequences 54 replikin 54 Poisson regression 54 amplicon 54 noncoding DNA 54 capillary electrophoresis CE 54 PTPN# 54 extramedullary 54 reverse vaccinology 54 Kruskal Wallis test 54 PRNP 54 tumorigenicity 54 neutralizing antibody 54 SNP rs# [001] 54 extracellular domains 54 genetically divergent 54 pseudogene 54 RNA Seq 54 human metapneumovirus 54 gp# [002] 54 ribosomal RNA gene 54 Francisella 54 homologs 54 laboratory experiments 54 evolvability 54 poxvirus 54 etiologic agent 54 homology 54 ciliated 54 transcriptome 54 C. burnetii 54 RNA transcription 54 microRNA biomarkers 54 morphologic 54 bioinformatic 54 ESR1 54 gene expression profiles 54 genomic variation 54 Anaplasma 54 SDS PAGE 54 transcriptomics 54 chromatin remodeling complex 54 Regression analyzes 54 Plasmodium falciparum 54 scanning tunneling microscopy STM 54 artifactual 54 transcriptional regulation 54 macaque genome 54 HLA DRB1 54 PALB2 54 Kaplan Meier analysis 54 morphological traits 54 histopathologic 54 immunoprecipitation 54 effector proteins 54 histopathological 54 nanobacteria 54 comparative genomic hybridization 54 metabolomic profiling 54 whole exome sequencing 54 acid phosphatase 54 MECP2 gene 54 Neandertal genome 54 genome sequences 54 Supplementary Table 54 petrological 54 spectroscopic analysis 54 MMP# 54 Typhi 54 TP# gene 54 clefting 54 hybridizations 54 sporadic ALS 54 primordial germ cells 54 Bayesian statistical 54 subgenus 54 conformational changes 54 Brean Hammond 54 Staphylococcus epidermidis 54 vivo experiments 54 mosaicism 54 Plasmodium vivax 54 Streptococcus agalactiae 54 homology modeling 54 HERV 54 chromosome translocations 54 DLC1 54 molecular determinants 54 lentiviral 54 RNA ribonucleic acid 54 ancient retrovirus 54 silico modeling 54 Chromera 54 chemometric 54 M. leprae 54 reanalysed 54 methyltransferase 54 phenotypic traits 54 distinct subtypes 54 coding genes 54 #q# deletion 54 B. henselae 54 cDNA clones 54 HLA genotyping 54 V3 loop 54 Treponema pallidum 54 Flow cytometry 54 tissue microarray 54 electrospray ionisation 54 causal variants 53 semiquantitative 53 abnormal prions 53 mutant alleles 53 sporadic Creutzfeldt Jakob 53 genetic aberrations 53 molecular mimicry 53 histological examination 53 causative mutation 53 FluChip 53 Antigenic 53 cohesin 53 LRP5 53 causative genes 53 SNP rs# [002] 53 electron microscopic 53 Mitochondrial DNA 53 MenSCs 53 Mendelian genetics 53 ribosomal RNA rRNA 53 retrospective cohort study 53 CYP#D# gene 53 #S subunit 53 C#T [002] 53 parasitoid wasp 53 intravital 53 A. ramidus 53 bioinformatic approaches 53 vertebrate embryos 53 ribonucleic acids 53 morphological characteristics 53 amplicon sequencing 53 alphavirus 53 sympatric speciation 53 autism susceptibility genes 53 major histocompatibility complex 53 N. gonorrhoeae 53 cyclophilin 53 cryo EM 53 mammalian tissues 53 clinicopathologic 53 A. phagocytophilum 53 gene inactivation 53 ramidus 53 holotype 53 Sequencing Systems 53 nematode C. elegans 53 Multivariate logistic regression 53 MRSA isolates 53 Prevotella 53 Single Nucleotide Polymorphism 53 MYBPC3 53 transgene expression 53 evolutionarily conserved 53 dinucleotide 53 histocompatibility 53 weak gravitational lensing 53 mammalian genome 53 Argonaute 53 spontaneous mutation 53 outbred 53 ALK mutations 53 RNAi mediated 53 reverse transcription polymerase 53 neuropathologic 53 PCR assays 53 luciferase gene 53 logistic regression models 53 disulfide bond 53 polyploidy 53 susceptibility loci 53 Daryl Bem 53 taxa 53 Or#b 53 genomic DNA 53 FOXP2 gene 53 Fig. 1b 53 H#Y 53 amplicons 53 fungal strains 53 MALDI TOF 53 retrospective cohort 53 DFT calculations 53 serum antibodies 53 protein encoded 53 siRNA duplexes 53 germline 53 enteroviruses 53 Saccharomyces 53 3'UTR 53 oseltamivir resistance 53 chromosomal aberrations 53 meta analytic 53 processive 53 Xenopus laevis 53 Neanderthal genes 53 bdelloid rotifers 53 recombinants 53 Logistic regression 53 TMPRSS2 ERG fusion 53 D. melanogaster 53 bioinformatic analyzes 53 trimer 53 chromosome #q# [001] 53 numerical simulations 53 luciferase reporter 53 jawed vertebrates 53 exon intron 53 genetic ancestry 53 Population Database 53 ribosomal protein 53 odorant receptor 53 S. pombe 53 histone acetylation 53 LRRK2 gene 53 mass spectrometric analysis 53 cryo electron microscopy 53 Trichoderma reesei 53 MLH1 53 MAOA gene 53 Burkholderia 53 GnRH neurons 53 M. anisopliae 53 nucleic acid sequence 53 metagenome 53 germline mutations 53 RNA sequencing 53 Vibrio cholerae 53 kilobases 53 KRAS BRAF 53 morphometrics 53 tiling arrays 53 biomolecular interactions 53 protein ligand 53 C. pneumoniae 53 distantly related species 53 Orrorin tugenensis 53 genetic blueprints 53 bioluminescence imaging 53 genes encoding 53 mitochondrial proteins 53 epigenetic silencing 53 assay detects 53 paraffin embedded tissue 53 Saccharomyces cerevisiae 53 simian immunodeficiency virus 53 C. albicans 53 ubiquitin ligases 53 HLA genes 53 H5 viruses 53 reassortant 53 computerized tomography scan 53 multivariate logistic regression 53 modifier genes 53 K ras mutations 53 apoE 53 Prox1 53 mutational 53 MTT assay 53 A. sediba 53 reverse transcriptase RT 53 heterozygosity 53 lysates 53 Apc 53 hESC lines 53 Western blot 53 chromosome #q# [002] 53 Plasmodium knowlesi 53 noncoding RNAs 53 sRNAs 53 detect XMRV 53 passaging 53 paleomagnetic 53 Wwox 53 agarose gel electrophoresis 53 PNAS paper 53 Ichthyostega 53 linear regression analyzes 53 DNA sequences 53 Isotopic 53 proteolytic cleavage 53 RNA binding 53 Cre recombinase 53 amino acid substitutions 53 morphologically distinct 53 chromosomal translocations 53 GSOs 53 EBNA1 53 Fourier transform infrared 53 centromere 53 RNA amplification 53 Mass Spectrometry MS 53 immunostaining 53 antimicrobial susceptibility 53 recessive mutation 53 Exome 53 polyadenylation 53 ELISpot 53 microarray datasets 53 underlying molecular mechanisms 53 clade 53 missense mutation 53 retrotransposon 53 T SPOT.TB 53 X ray absorption spectroscopy 53 regression equations 53 exfoliated graphene 53 nonparametric 53 microglial 53 antisense RNA 53 RNA splicing 53 ZNF# 53 M. paratuberculosis 53 vimentin 53 homologous sequences 53 Epidemiologic 53 multiplex ligation dependent 53 evolutionary genomics 53 toxicological studies 53 worm C. elegans 53 microRNA profiling 53 glycosyltransferase 53 sputum specimens 53 univariate 53 virological 53 uPAR 53 spore formation 53 serological testing 53 manually curated 53 transgenic zebrafish 52 Pikaard 52 Illumina sequencing 52 Paleobiology Database 52 Genotyping 52 clonally 52 serologic testing 52 fluorescence spectroscopy 52 metagenomics 52 HCV replication 52 intron 52 monozygotic twins 52 GenBank database 52 Agrobacterium 52 demethylase 52 genomic proteomic 52 Sequencing System 52 PECARN 52 microdissection 52 capillary sequencing 52 sedimentological 52 genes encode 52 PB2 gene 52 CTCF 52 endosymbiosis 52 TSC1 52 C#BL/#J 52 flow cytometric 52 hemoglobins