Related by context. All words. (Click for frequent words.) 71 orthologs 71 genes differentially expressed 71 cDNAs 70 #S rRNA 70 #S rRNA gene 70 immunohistochemical analysis 69 differentially expressed proteins 69 missense mutations 69 splice variants 69 transcriptomic 69 miRNA expression 69 RRM1 68 constitutively expressed 68 immunoblotting 68 somatic mutations 68 Genotypes 68 genetic loci 68 phylogenetic analyzes 68 QTLs 68 immunohistochemical 68 nucleotide substitutions 68 immunostaining 68 #S rDNA 67 rs# [004] 67 transgene expression 67 sequence homology 67 indels 67 transcriptomes 67 paralogs 67 genotypic 67 alkaline phosphatase ALP 67 hamartomas 67 heterozygotes 67 multiple logistic regression 67 orthologous 67 allele frequencies 67 Supplementary Table 67 qRT PCR 67 proteomic analysis 67 rs# [001] 66 mRNA transcripts 66 HER2 expression 66 HepG2 cells 66 quantitative RT PCR 66 E. faecalis 66 posttranslational modifications 66 nucleated cells 66 microsatellite markers 66 conserved sequences 66 quantitative trait loci 66 kDa protein 66 mRNA expression 66 Western blotting 66 sequenced genomes 66 susceptibility loci 66 indel 66 Immunohistochemical staining 66 cDNA microarray 66 KRAS mutations 66 virulence genes 65 prognostic markers 65 homologues 65 cDNA libraries 65 K ras 65 MTT assay 65 VNTR 65 subcellular localization 65 metabolomic profiles 65 differential gene expression 65 extramedullary 65 methylated DNA 65 microRNA expression 65 hyperplastic 65 immunohistochemical staining 65 genomic alterations 65 mutant alleles 65 germline mutations 65 Multivariate analysis 65 phenotypic traits 65 protein isoforms 65 explanatory variables 65 gene expression profiles 65 CDKN2A 65 H#K#me# 65 miRNA genes 65 mitochondrial gene 65 hepatocellular carcinomas 65 NSCLC tumors 65 gene expression microarrays 65 K ras mutations 65 gene loci 65 PTPN# 65 gene amplification 65 cytochrome b 65 TMPRSS2 ERG fusion 65 causal variants 65 Immunohistochemical analysis 65 ORFs 65 prostate carcinoma 65 Genotypic 65 histological subtype 65 substrate specificity 65 ncRNA 65 ABCB1 65 KLF4 65 hypermethylated 65 coding genes 65 histone modifications 64 gene locus 64 lung adenocarcinomas 64 TIMP 1 64 PBMCs 64 MRSA isolates 64 microdeletions 64 previously undescribed 64 genetic polymorphism 64 intergenic regions 64 Phylogenetic analysis 64 S. enterica 64 intergenic 64 methylation patterns 64 homodimer 64 histopathological 64 splice junctions 64 biochemical assays 64 Cytogenetic 64 tumorigenicity 64 proteomes 64 multivariate analyzes 64 homozygotes 64 immunofluorescence 64 chromosomal regions 64 coexpression 64 BAC clones 64 synthases 64 gene polymorphisms 64 MSH2 64 S. cerevisiae 64 fig. S4 64 supernatants 64 ChIP Seq 64 nucleotide sequences 64 metaplasia 64 FGFs 64 RFLP 64 differentially regulated 64 lysine residues 64 FLT3 64 DNA demethylation 64 lysates 64 metabolite concentrations 63 genetic polymorphisms 63 UTRs 63 biopsy specimens 63 functional polymorphism 63 HRCT 63 quantitative PCR 63 histopathologic 63 Fig. 3a 63 ALK mutations 63 RNA seq 63 HCT# 63 immunofluorescence microscopy 63 ncRNAs 63 TMPRSS2 ERG 63 vimentin 63 allelic 63 cytokeratin 63 monocytic 63 phenotypic variation 63 miRs 63 orthologous genes 63 Histologic 63 5 hmC 63 KRAS mutation 63 microarray experiments 63 colorectal tumor 63 phylogenetically 63 mtDNA mutations 63 transcriptional profiling 63 pseudogenes 63 ploidy 63 coding sequences 63 HLA DQ2 63 Microarray analysis 63 isotypes 63 inhibin B 63 Histological examination 63 nanomolar 63 AMACR 63 MALDI TOF MS 63 cell lysate 63 etiologic 63 C#Y 63 #p# [003] 63 intronic 63 p# activation 63 promoter methylation 63 HBV genotype 63 operons 63 hepatoma 63 Phenotypic 63 epithelial tumors 63 ChIP chip 63 SNP rs# [001] 63 Univariate analysis 63 phospholipase 63 ultraconserved elements 63 morphologic 63 proteolytic cleavage 63 IgG antibody 63 cytotoxicity assays 63 cisplatin resistant 63 carcinoembryonic antigen 63 K#N 63 protein tyrosine phosphatase 63 differentially expressed 63 MMP# 63 monozygotic 63 renal cell carcinomas 63 immunoreactivity 63 serum biomarkers 63 DGGE 63 MDR1 63 amino acid residues 63 mitochondrial proteins 63 aneuploidies 63 CagA 63 bacterial genomes 63 microsatellite loci 63 microsatellite instability 63 monozygotic twins 63 ANCOVA 63 Proteobacteria 63 lymphoid cells 63 putative biomarkers 63 SDS PAGE 63 ortholog 63 homozygosity 63 mitochondrial DNA mtDNA 63 cysteines 63 histopathologic examination 63 erythrocytes 62 PCa 62 evolutionarily conserved 62 ribosomal proteins 62 murine models 62 RT qPCR 62 transfected cells 62 haplogroups 62 ligand binding 62 CD1d 62 thyrotropin 62 C#T [002] 62 cerevisiae 62 nucleotide sequence 62 Supplementary Fig 62 hemoglobins 62 coding exons 62 bronchial epithelial cells 62 LNCaP cells 62 nodal metastasis 62 P2X 62 IL#B 62 gastric carcinoma 62 mammalian proteins 62 microRNA biomarkers 62 Haplotype 62 haematopoietic 62 Multiple logistic regression 62 cell lysates 62 RNA sequences 62 mutant allele 62 S. maltophilia 62 OCT4 62 cardiac troponin T 62 Univariate 62 introgression 62 C. albicans 62 tyrosine phosphorylation 62 HLA DR 62 homologs 62 mutational analysis 62 biochemical abnormalities 62 Clusterin 62 HER2 HER3 62 E. histolytica 62 rs# [002] 62 urothelial carcinoma 62 Ki# 62 hMSCs 62 p# MAPK 62 phosphorylated proteins 62 ZNF# 62 variant allele 62 rRNA 62 C#BL 6 mice 62 β1 62 transmembrane domains 62 oligonucleotide microarrays 62 sitosterol 62 pathogenic mutations 62 seminomas 62 ERK signaling 62 randomized controlled trials RCTs 62 DRD2 62 MEFs 62 lipoxygenase 62 Rab5 62 COL#A# 62 genes encoding 62 polyploid 62 transgenic rats 62 hydroxylase 62 RNA transcripts 62 agarose gel electrophoresis 62 operon 62 multivariate Cox 62 univariate analyzes 62 GSTP1 62 breast cancer subtypes 62 EGFR HER2 62 mutated K ras 62 mucinous 62 astrocytic 62 P. gingivalis 62 MLH1 62 colorectal adenocarcinoma 62 chromosome #q#.# [002] 62 3'UTR 62 V#F mutation 62 Figure 2C 62 ELISPOT 62 telomere lengths 62 loci 62 adenocarcinomas 62 circadian genes 62 LRAT 62 Histopathologic 62 GPx 62 ultrastructural 62 nucleotide variations 62 interleukin IL 62 trophoblast cells 62 CD#c 62 SNP rs# [002] 62 Aspergillus nidulans 62 inbred strains 62 fig. S1 62 CD# expression [001] 62 tumor biopsies 62 proton MR spectroscopy 62 pharmacodynamic endpoints 62 genomewide 62 apolipoproteins 62 fig. S2 62 ELISpot 62 transcriptional regulation 62 C. trachomatis 62 serum concentrations 62 seropositivity 62 ERalpha 62 MAPK pathway 62 TNFalpha 62 HER2 receptor 62 salivary proteins 62 #S rRNA genes 62 RT PCR assay 62 heterodimers 62 mammalian genomes 61 transferrin receptor 61 BMP2 61 semiquantitative 61 P. patens 61 vitro experiments 61 distinct subtypes 61 immunoprecipitation 61 causative mutations 61 S aureus 61 cis regulatory 61 proto oncogene 61 gastric adenocarcinoma 61 RQ PCR 61 transmembrane 61 karyotype 61 Polymorphisms 61 splenocytes 61 At#g# 61 F FDG PET 61 CCR7 61 serum antibodies 61 B. longum 61 immunohistochemistry IHC 61 androgen receptor AR 61 transcriptional profiles 61 isoforms 61 logistic regression analysis 61 serine protease 61 PFGE 61 globin genes 61 chromosomal rearrangement 61 pharmacodynamic markers 61 homologous genes 61 prion strains 61 Histologically 61 p# p# 61 perilipin 61 Liver biopsies 61 C#BL/#J 61 Multivariate logistic regression 61 genomically 61 noncoding RNAs 61 IL 1β 61 K#R [002] 61 Rap1 61 univariate 61 RNA polymerases 61 serum leptin 61 Trichophyton rubrum 61 HLA antigens 61 IgA deficiency 61 colorectal carcinomas 61 karyotypes 61 Prevotella 61 Saccharomyces 61 allele frequency 61 breast carcinomas 61 vitro assay 61 chromosome aberrations 61 microarray gene expression 61 histologic subtypes 61 heterozygosity 61 explants 61 HOTAIR 61 induced sputum 61 phylogeographic 61 Monocytes 61 Leydig cell 61 ultrastructure 61 subcellular compartments 61 cellularity 61 annexin V 61 mesotheliomas 61 APOE genotype 61 IgG4 61 bone marrow stromal cells 61 mediated inhibition 61 phenotypic characteristics 61 dinucleotide 61 transmembrane proteins 61 bisulfite sequencing 61 CC genotype 61 cathepsin B 61 homodimers 61 monogenic 61 dizygotic twins 61 univariate analysis 61 constitutively active 61 endophenotypes 61 mononuclear cells 61 TIMP 61 selective antagonists 61 hierarchical clustering 61 array CGH 61 pDC 61 NRTI resistance 61 db db mice 61 S. aureus isolates 61 mononuclear 61 male Wistar rats 61 gene expression patterns 61 prostate cancer CaP 61 multivariable analysis 61 archaeal 61 2n = 61 microbiomes 61 nucleolar 61 chloroplast genome 61 histological examination 61 enolase 61 dimeric 61 M. pneumoniae 61 homology 61 uPAR 61 logistic regressions 61 Fas ligand 61 malignant nodules 61 Enterobacteriaceae 61 CHD7 61 logistic regression analyzes 61 hypermethylation 61 cytological 61 hepatocyte 61 transfected 61 previously uncharacterized 61 IGFBP2 61 xenografts 61 CSF biomarkers 61 immunofluorescence staining 61 cytokine receptor 61 plastid 61 cystatin C 61 pancreatic adenocarcinoma 61 hTERT 61 lymph node metastasis 61 cynomolgus monkeys 61 monophyletic 61 p# biomarker 61 peripheral blood mononuclear 61 p# antigen 61 flow cytometric analysis 61 potent inhibitors 61 clinicopathological 61 ± SEM 61 autoantigens 61 KRAS status 61 paternally inherited 61 ovarian carcinoma 61 MTHFR 61 intact parathyroid hormone 61 normal karyotype 61 metazoans 61 microbiologic 61 Cathepsin B 61 glycosylated 61 CD#b 61 GLUT1 61 racemic baclofen 61 human leukocyte antigens 61 adducts 61 miR #a [001] 61 variant rs# 61 methyltransferase 61 miRNA expression profiles 61 Fig. 2B 61 renal tumors 61 herpesviruses 61 conditional logistic regression 61 TOP2A 61 PrPSc 61 secretory proteins 61 multivariate logistic regression 61 C. jejuni 61 molecular subtypes 61 taxa 61 A. thaliana 61 catechol O methyltransferase 61 outer membrane proteins 61 Bacteroides 61 recombinants 61 cytologic 61 sarcosine 61 clonal expansion 61 ABCB1 gene 61 ribosomal protein 61 CD4 ^ sup 61 dehydrogenases 61 Activating mutations 60 contigs 60 interobserver 60 florbetaben 60 transcriptome sequencing 60 non coding RNA 60 cystatin 60 HLA alleles 60 genes CYP#C# 60 CIN2 + 60 FDG PET imaging 60 Wwox 60 mTOR inhibitors 60 GlcNAc 60 eosinophil count 60 quasispecies 60 Nedd4 60 BRCA2 mutation carriers 60 immunocytochemistry 60 logistic regression model 60 CYP#C# [002] 60 hematopoietic cells 60 endonuclease 60 Fig. 3b 60 Sanger sequencing 60 Kaplan Meier analysis 60 DNA methyltransferases 60 granzyme B 60 chromosome #q# [001] 60 serologically 60 beta1 integrin 60 Confocal microscopy 60 budding yeast 60 Typhi 60 matrix metalloproteinase MMP 60 D. melanogaster 60 Sprague Dawley rats 60 gene rearrangements 60 CDX2 60 cytokine receptors 60 antibody antigen 60 causative mutation 60 Alkaline Phosphatase 60 acyl CoA 60 mesenchymal stromal cells 60 Phylogenetic analyzes 60 activating mutations 60 somatostatin 60 sleeve lobectomy 60 replicase 60 microarray datasets 60 Trichinella 60 primary cilia 60 CYP#D# 60 cytidine 60 immunofluorescent 60 distinct lineages 60 miR #a [002] 60 single celled yeast 60 UGT#A# * 60 interferon γ 60 NF kB pathway 60 Macrophage 60 Corynebacterium 60 flavopiridol 60 inactivating mutations 60 Arabidopsis genes 60 genomic loci 60 apolipoprotein B 60 oligonucleotide microarray 60 #p#.# [001] 60 Histone 60 metazoan 60 colocalization 60 leiomyoma 60 UGT#A# 60 Logistic regression 60 amino terminal 60 c MYC 60 phylogenetic analysis 60 PON1 60 Histological 60 lysate 60 Doppler sonography 60 lesional 60 pairwise 60 histone acetylation 60 E#F# 60 fluorescently labeled 60 isotype 60 sensu lato 60 breast carcinoma 60 TCF#L# gene 60 thioredoxin 60 HERV 60 EphB4 60 posttranslational modification 60 steroidogenic 60 adipokines 60 Estrogen Receptor 60 situ hybridization 60 metabolic parameters 60 Macaca mulatta 60 chromosomal anomalies 60 homozygote 60 metastatic lymph nodes 60 tumor xenograft models 60 cells transfected 60 Alu elements 60 5 HT2C receptor 60 Secretase 60 Upregulation 60 isoenzyme 60 uM 60 bacterial virulence 60 circulating endothelial cells 60 hematopoietic progenitor cells 60 chromatin immunoprecipitation 60 ^ sup #m 60 bone scintigraphy 60 Myeloperoxidase 60 SLC#A# [001] 60 aCGH 60 chromatogram 60 colorectal carcinoma 60 guanosine 60 Gram stain 60 centromeric 60 kaempferol 60 steroidogenesis 60 mRNA molecules 60 advanced neoplasia 60 phylogenetic relationships 60 pDCs 60 xenograft tumors 60 dimensional sonography 60 mitogen activated protein kinase 60 leucocytes 60 K RAS 60 protein coding RNAs 60 cTnT 60 KIAA# 60 beta actin 60 BRAF V#E 60 amino acid sequences 60 Oct4 60 CYP#A# [002] 60 Aeromonas 60 T. brucei 60 phenotyping 60 mesenchymal stem cells MSCs 60 CGG repeats 60 peroxisomal 60 IgG antibodies 60 receptor ligand 60 matrix metalloproteinases 60 aggrecan 60 Epidemiologic studies 60 dose proportionality 60 PALB2 60 TP# mutations 60 ERK1 2 60 NOD SCID mice 60 APTIMA HPV 60 histocompatibility 60 Cytotoxic T 60 neoplastic cells 60 Transcriptome 60 linkage disequilibrium LD 60 genotypic resistance 60 oligonucleotide probes 60 maternally inherited 60 inhibin 60 CDH1 60 D#N 60 chimpanzee genomes 60 GSTT1 60 uncharacterized genes 60 invasive carcinomas 60 Oncogenic 60 Haptoglobin 60 threonine 60 uricase 60 δ 60 DNase 60 nutlin 3a 60 #β HSD1 60 molecular biomarkers 60 serous ovarian cancer 60 receptor subtypes 60 Cyclin E 60 microRNA molecules 60 dopamine transporter gene 60 biochemical marker 60 aminotransferase 60 syngeneic 60 mycobacterial 60 cultured neurons 60 R#W [002] 60 Lymphocytes 60 kinase domain 60 Figure 1A 60 hydroxyproline 60 variant alleles 60 statistically significant correlations 60 amplicons 60 HbF 60 situ hybridisation 60 clinicopathologic 60 polyadenylation 60 gastric carcinomas 60 CHEK2 60 esophageal squamous cell carcinoma 60 histologic findings 60 cell adhesion molecule 60 pairwise comparisons 60 MLL gene 60 microsomal 60 S#A# [002] 60 fig. S# 60 BCR ABL mutations 60 CYP# [001] 60 prostate cancer PCa 60 endometrioid 60 plastids 60 potent inhibition 60 LRP6 60 tropomyosin 60 GenBank accession 60 aneuploid 60 CYP#D# gene 60 alveolar epithelial cells 60 benzimidazole 60 ependymomas 60 plasma pharmacokinetics 60 leiomyomas 60 Dpp 60 PCR RFLP 60 FGFR2 60 N. gonorrhoeae 60 #q#.# [001] 60 RANTES 60 multigene 60 androgen receptor gene 60 pyrimidine 60 homogenates 60 D Dimer 60 papillary renal cell carcinoma 60 aT cell 60 plasma lipid 60 β galactosidase 60 comparative genomic 60 PPARg 60 microdeletion 60 HSPCs 60 susceptibility locus 60 adipogenic 60 IFN gamma 60 EGF receptors 60 radiolabeled 60 histone modification 60 SMAD4 60 pyrimidines 60 miRNAs miR 60 PDGFR 59 silico prediction 59 gamete formation 59 HER2 amplification 59 Annexin V 59 GAGs 59 ciliated 59 Jhdm2a 59 linkage disequilibrium 59 photon microscopy 59 phenotypic differences 59 rs# rs# 59 #F FDG 59 cTnI 59 molecular abnormalities 59 acyltransferase 59 HGPIN 59 immunized mice 59 clades 59 Fig. 2A 59 multiprotein complex 59 epithelia 59 HCV replicon 59 hematopoietic progenitors 59 subfamilies 59 #ß 59 familial aggregation 59 Figure 1C 59 anterior pituitary 59 thymocyte 59 cytokines IL 59 VKORC1 59 adipocyte 59 Supplemental Figure 59 #T# L1 59 X chromosome inactivation 59 transgenic mouse models 59 Solexa sequencing 59 poor metabolizers 59 PCR assay 59 HAAH 59 melanocytic nevi 59 humoral responses 59 annexin 59 calculi 59 Amino acid 59 granulocyte 59 fig. S6 59 transduced 59 vitro studies 59 amphioxus 59 wildtype 59 Fig. 2a 59 druggable targets 59 radioligand 59 receptor gene 59 EGFR protein 59 synteny 59 urothelial 59 tumoral 59 heterologous 59 site directed mutagenesis 59 NGAL 59 fluoroquinolone resistant 59 B7 H3 59 adenoviral 59 fruitfly Drosophila 59 fission yeast 59 FGFR3 59 tumor subtypes 59 transcriptional activation 59 IFN γ 59 EGFR expression 59 donor acceptor 59 Polymorphism 59 Cry1Ab 59 Leydig cells 59 urothelial cancer 59 CYP#B# 59 scintigraphy 59 MenSCs 59 frameshift mutation 59 mRNA sequences 59 flow cytometric 59 μmol L 59 methylation markers 59 Poisson regression 59 epistasis 59 FDG uptake 59 kinome 59 mosaicism 59 albicans 59 TRP channels 59 fluoroquinolone resistance 59 metastatic prostate 59 urine cytology 59 CXCR2 59 lipid accumulation 59 seminal vesicle 59 PKC isoforms 59 isoenzymes 59 effector protein 59 pleural fluid 59 histologically 59 mammaglobin 59 splice variant 59 proband 59 polycythemia vera PV 59 cellulases 59 TSC1 59 bronchoalveolar lavage fluid 59 plasma adiponectin 59 KRAS oncogene 59 cofactors 59 VEGF receptor 59 dermatophytes 59 pro angiogenic 59 clade B 59 N glycan 59 bioluminescent imaging 59 alpha fetoprotein AFP 59 core needle biopsies 59 MDRD 59 diagnostic biomarker 59 mammary stem cells 59 T#M 59 mutant p# 59 multinucleated 59 IDH1 mutation 59 normoxic 59 HLA DRB1 59 transcriptional repressor 59 ASCUS 59 MR spectroscopy 59 Antigens 59 fluorescently tagged 59 binary logistic regression 59 vitro cytotoxicity 59 transgenic mice expressing 59 hemagglutination 59 oligosaccharide 59 CD# expression [002] 59 comparative genomic hybridization 59 C1q 59 lymphoma subtypes 59 somatic mutation 59 glucan 59 CCR9 59 CDK4 59 multivariable logistic regression 59 MiRNAs 59 cyclophilin D 59 sialic acids 59 SSc patients 59 outbred 59 LJ# [002] 59 KIF6 gene 59 distantly related species 59 adipose cells 59 p# mutation 59 cathepsin 59 μg ml 59 receptor subunits 59 pathologic examination 59 aggregated Abeta 59 lactis 59 microcephalin 59 Hepatocytes 59 cytoplasmic domain 59 LVNC 59 GSTM1 59 transthyretin 59 Eg5 59 metastatic neuroendocrine tumors 59 SPINK1 59 etiologic agent 59 oncologic outcomes 59 glycosyltransferase