coding sequences

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(Click for frequent words.) 74 intergenic 72 nucleotide sequence 71 protein coding RNAs 70 paralogs 70 coding genes 69 mRNA transcripts 68 protein coding 68 alternatively spliced 68 virulence genes 68 mRNA molecules 68 intergenic regions 67 exons 67 3'UTR 67 sequence homology 67 yeast genome 67 indels 67 amino acid sequence 67 A. thaliana 67 untranslated regions 67 Alu elements 66 DNA sequences 66 nucleotide sequences 66 amplicons 66 RNA polymerases 66 orthologs 66 #S rRNA 66 genes encoding 66 recombination hotspots 66 hypermethylated 66 RNA sequences 66 UTRs 66 methylation patterns 66 ORFs 66 missense mutations 65 gene sequences 65 cis regulatory 65 noncoding 65 substrate specificity 65 RNA transcripts 65 microarray experiments 65 loci 65 coding RNA 65 splice junctions 65 cDNAs 65 methylated DNA 65 operons 65 primate genomes 65 orthologous 65 pseudogenes 65 ribosomal DNA 64 chromatin structure 64 operon 64 transcriptomes 64 gene duplications 64 noncoding RNAs 64 nucleotide substitutions 64 histone modifications 64 mammalian genomes 64 miRNA expression 64 mitochondrial gene 64 rRNA 64 #S rRNA gene 64 nucleotide 64 homologs 64 cytochrome b 64 intronic 64 polynucleotide 64 amyloidogenic 63 protein encoded 63 cDNA libraries 63 microRNAs miRNAs 63 splice variants 63 miRNAs 63 PTPN# 63 insertions deletions 63 eukaryotic 63 Arabidopsis genes 63 differentially expressed genes 63 amino acid sequences 63 intron 63 eukaryote 63 heterochromatin 63 allelic 63 uPAR 63 conserved sequences 63 amino acid residues 63 homodimer 63 somatic mutations 63 MIF protein 63 ncRNAs 63 Jhdm2a 63 eukaryotic genomes 63 kilobase 63 centromeric 63 proteins encoded 63 heterochromatic 63 genomic loci 63 quantitative trait loci 63 isoforms 63 eukaryotic cells 63 ncRNA 63 #S rDNA 63 BAC clones 62 clades 62 KIAA# 62 transcriptional regulation 62 deacetylation 62 bacterial genomes 62 subfamilies 62 outer membrane proteins 62 miRNA genes 62 kilobases 62 hypermethylation 62 microRNA molecules 62 TP# gene 62 transgene expression 62 mRNA sequences 62 viral genomes 62 DLC1 62 unmethylated 62 gene amplification 62 transcriptome 62 short hairpin RNAs 62 indel 62 cytopathic 62 cysteine residues 62 evolutionarily conserved 62 methyltransferase 62 M. pneumoniae 62 HOTAIR 62 Supplementary Fig 62 protein isoforms 62 synuclein 62 CRISPR 62 mutations 62 posttranslational modifications 62 sequenced genomes 61 archaeal 61 EAAT2 61 ribosomal RNA 61 neoplastic 61 H#K#me# 61 segmental duplications 61 Foxp3 61 epitopes 61 genetic loci 61 transcriptional repressor 61 isotype 61 methylated 61 homologous genes 61 Arabidopsis genome 61 glycosylated 61 V#F mutation 61 coexpression 61 shRNAs 61 At#g# 61 oligonucleotide probes 61 c Myb 61 CDKN2A 61 cellulases 61 subcellular localization 61 proteomes 61 cDNA 61 hTERT 61 endonuclease 61 exon 61 CpG islands 61 promoter methylation 61 haplotypes 61 constitutively active 61 phenotypic variation 61 cellular prion protein 61 mitochondrial DNA mtDNA 61 ERBB2 61 homologous 61 catenin 61 linkage disequilibrium 61 UCRs 61 phenotypic differences 61 ZNF# 61 alleles 61 coding exons 61 ALK mutations 61 spontaneous mutations 61 soluble proteins 61 DNMT1 61 FLT3 61 dinucleotide 61 lincRNA 61 lincRNAs 61 messenger RNAs 61 kDa protein 61 miRNA molecules 61 vertebrate genomes 61 mRNAs 61 MAPK pathway 61 fluorescence intensity 61 E1A 61 CpG 61 ERK2 61 genetic alterations 61 chromosomal regions 61 sporadic ALS 61 ribosomal RNA rRNA 61 messenger RNAs mRNAs 60 cell lysates 60 piRNAs 60 constitutively 60 centromeres 60 Drosophila genome 60 organism genome 60 polymorphisms 60 ABCB1 60 non coding RNAs 60 CCL#L# 60 HBx 60 genes 60 Prox1 60 microRNA miR 60 mRNA expression 60 FGFR2 60 beta actin 60 non coding RNA 60 PAK1 60 MLL gene 60 introns 60 breast carcinomas 60 tumor suppressor protein 60 alpha synuclein gene 60 lysine residues 60 ciliated 60 cyclin E 60 homologues 60 peptide sequences 60 Cre recombinase 60 B Raf 60 eukaryotic organisms 60 JAK STAT 60 3' UTR 60 gene rearrangements 60 chloroplast genome 60 histone protein 60 alternative splicing 60 var genes 60 clonally 60 microsatellite markers 60 kinase domain 60 HLA DRB1 60 prokaryote 60 transmembrane proteins 60 constitutively expressed 60 phylogenetic analyzes 60 CagA 60 TMPRSS2 ERG 60 single nucleotide polymorphism 60 Oct4 60 contigs 60 luciferase reporter 60 globin gene 60 S. cerevisiae 60 RRM1 60 transfected cells 60 Rap1 60 dsRNA 60 eukaryotic cell 60 transmembrane 60 mutational analysis 60 micro RNA 60 blastomeres 60 histone modification 60 orthologous genes 60 mitochondrial genomes 60 mammalian genome 60 vimentin 60 gene locus 60 unmutated 60 PrPSc 60 homozygosity 60 prokaryotic 60 polyploid 60 carboxyl terminal 60 fungal genomes 60 GNAQ 60 allele frequencies 60 TTR gene 59 tumorigenic 59 microcephalin 59 nucleolar 59 hepatoma 59 V3 loop 59 ChIP chip 59 DNA demethylation 59 leucine zipper 59 tRNAs 59 transmembrane protein 59 heterodimers 59 thymidylate synthase TS 59 RNA molecules 59 fig. S1 59 proteins 59 Plasmodium falciparum 59 Transcription factors 59 cytosolic 59 prion strains 59 chromosome #q# [001] 59 metazoan 59 TAp# 59 mitochondrial genome 59 transcription factors 59 proteolytic cleavage 59 centromere 59 extracellular domain 59 viral genome 59 tRNA synthetase 59 DNA polymerases 59 EBNA1 59 histone H3 59 genomic DNA 59 homodimers 59 Sanger sequencing 59 nucleosides 59 polyadenylation 59 monophyletic 59 hypervariable 59 subtypes 59 isotypes 59 NF1 gene 59 P. falciparum 59 BRAF protein 59 miR #a [001] 59 autosomal 59 nucleotide bases 59 transgenes 59 UGT#B# 59 Mycoplasma genitalium 59 β1 59 miR #a [002] 59 #q#.# [002] 59 metabolic enzymes 59 LRAT 59 bacterial genome 59 pRb 59 uncharacterized 59 gene loci 59 miR #b [002] 59 functional polymorphism 59 stem cell pluripotency 59 HLA genes 59 phosphorylated 59 eIF4E 59 mutated K ras 59 nucleic acid sequence 59 polymerases 59 gene expression profiles 59 tetramer 59 codons 59 TMPRSS2 ERG fusion 59 EphA2 59 amino acid substitutions 59 heterozygotes 59 CpG island 59 SCN5A 59 viral proteins 59 TERT 59 pathogenic mutations 59 KRAS mutations 59 splice variant 59 synteny 59 VNTR 59 major histocompatibility complex 59 genomes 59 EGFR protein 59 protein conformation 59 amphioxus 59 C. albicans 59 transcriptional repression 59 kDa 59 nucleated cells 59 NFKBIA 59 gene expression microarrays 59 haplotype 59 heterologous 59 mutant allele 59 E#F# 59 glycan 59 vascular endothelial cells 59 transfected 59 H#Y 59 epitope 59 IDH1 59 ligand binding 59 TLE3 58 clade B 58 amino acid residue 58 mitogen activated protein kinase 58 neutralizing antibody responses 58 GSTP1 58 molecular abnormalities 58 hepatocyte 58 COL#A# 58 mutant proteins 58 tyrosine phosphorylation 58 exome 58 HLA alleles 58 ADAMTS# 58 HER3 58 H#K# [001] 58 protein fragment 58 drug metabolizing enzymes 58 haploid 58 subcellular compartments 58 VHL gene 58 neutralizing antibody 58 histone proteins 58 genomic sequence 58 mammalian organisms 58 dimerization 58 bisulfite sequencing 58 uracil 58 homology 58 extracellular domains 58 CHD7 58 TRIM5 58 transgenic mice expressing 58 PAX5 58 chromosomal DNA 58 gene 58 FGFR3 58 antibody antigen 58 MALAT1 58 protein complexes 58 monocots 58 Haplotype 58 RKIP 58 CD1d 58 chimpanzee genomes 58 array CGH 58 MRSA isolates 58 sRNA 58 serine threonine kinase 58 RNAs 58 amplicon 58 deletion mutant 58 replicase 58 ribonucleic acid RNA 58 c myc 58 trans splicing 58 melanocyte 58 SMAD4 58 tRNA synthetases 58 ubiquitinated 58 receptor binding 58 PTEN gene 58 SOD1 58 plastids 58 exosome 58 B. cereus 58 KLF4 58 acetyl groups 58 phenotypes 58 GSTM1 58 meganuclease 58 CG methylation 58 beta globin gene 58 uncharacterized genes 58 maternally inherited 58 histone 58 ERK1 2 58 SNP rs# [001] 58 sialic acids 58 prodynorphin 58 SNPs 58 apoE 58 HDAC enzyme 58 chromosomal rearrangements 58 tetramers 58 polypeptide chain 58 genomic deletions 58 K ras mutations 58 mRNA decay 58 C. jejuni 58 chromosome #q# [002] 58 acetylation 58 autism susceptibility genes 58 histologic subtypes 58 enzymatic activity 58 androgen receptor AR 58 disulfide bond 58 EZH2 58 viral RNA 58 oncoprotein 58 superfamily 58 genotypes 58 C. neoformans 58 TMEM#B 58 immunoblotting 58 serine protease 58 ChIP seq 58 mutant alleles 58 synthases 58 histocompatibility 58 Fig. 3a 58 distinct subtypes 58 phyla 58 cystatin 58 Wwox 58 hepatocellular carcinomas 58 chloroplast 58 homolog 58 chromosomal translocations 58 QTLs 58 prion gene 58 proteomic analysis 58 peroxidase 58 serine threonine kinases 58 proapoptotic 58 DNA methyltransferases 58 ERK1 58 NFκB 58 malignant prostate 58 microdeletions 58 transcriptomic 58 phosphorylates 58 microRNA expression 58 HCV replication 58 membrane proximal 58 phenotype 58 luciferase 58 cytosine methylation 58 CXCR4 58 rs# [002] 58 somatic mutation 58 ChIP Seq 58 gene encoding 58 MSH2 58 transcriptome sequencing 58 biogenesis 58 FGF signaling 58 OCT4 58 phenotypically 58 mtDNA mutations 58 ESTs 58 phenotypic expression 58 SH2 domain 58 ribonucleic acids 58 proline rich 58 immunodominant 58 gamma globin 58 deuterostomes 58 L. pneumophila 58 murine 58 MLH1 58 yeast Saccharomyces cerevisiae 58 STAT4 58 BDNF gene 58 Mendelian 58 chromatogram 58 intracellular signaling 58 proto oncogene 58 K ras 57 neurite outgrowth 57 replicon 57 GSTT1 57 DLX5 57 amyloid fibrils 57 Nedd4 57 epigenetic silencing 57 serine threonine 57 germline 57 telomerase reverse transcriptase 57 genomic rearrangements 57 activating mutations 57 kinase gene 57 GLI1 57 Supplementary Table 57 5 hydroxymethylcytosine 57 HDACs 57 MDR1 57 enolase 57 OCA2 57 lung carcinomas 57 epigenetic modification 57 #q#.# [001] 57 valine 57 mutant protein 57 interactome 57 p# activation 57 regulates gene expression 57 microRNAs 57 transcriptional machinery 57 chaperone proteins 57 nanomolar 57 FUS1 57 CYP#C# [002] 57 tumor suppressor gene 57 germline mutations 57 EF Tu 57 transcriptionally 57 causative mutations 57 causal variants 57 DNA methylation patterns 57 differential gene expression 57 centrosome 57 gene expression 57 fission yeast 57 Saccharomyces cerevisiae 57 MiRNAs 57 EGFRvIII 57 P. patens 57 glycosylation profile 57 PKD1 57 TGF ß 57 phenotypic traits 57 EphB4 57 phytochrome 57 epigenetic modifications 57 trypanosome 57 normal prion protein 57 STK# [002] 57 molecular subtypes 57 carcinoembryonic antigen 57 exomes 57 transmembrane receptor 57 mesothelin 57 microRNA molecule 57 RNA splicing 57 Cyclin D1 57 monogenic 57 tumorigenicity 57 ubiquitylation 57 lymphoblastoid cell lines 57 RUNX3 57 pleiotropic 57 homologous sequences 57 paramyxoviruses 57 allelic variation 57 multicellular organisms 57 STAT1 57 cytoplasmic tail 57 RNA molecule 57 LRRK2 gene 57 cytokine receptor 57 rs# [004] 57 genetic alteration 57 genetic aberrations 57 Methylation 57 mosaicism 57 protein subunits 57 nucleolus 57 N Myc 57 Drosha 57 missense mutation 57 transduced 57 metalloproteins 57 retrotransposon 57 N acetyltransferase 57 Skp2 57 GAPDH 57 #p#.# [001] 57 rs# [001] 57 quantitative RT PCR 57 membrane fusion 57 stranded RNAs 57 amino acid substitution 57 Plasmodium vivax 57 GenBank accession 57 immunoreactivity 57 DEAR1 57 hemagglutinin HA 57 recombinantly 57 myeloid 57 tumor suppressor p# 57 HIF 1alpha 57 A. gambiae 57 imprinted genes 57 cathepsin B 57 transiently transfected 57 cDNA library 57 ribosomal proteins 57 MC1R gene 57 H#K# [002] 57 telomeric 57 noncoding RNA 57 miRs 57 ultraconserved elements 57 Activating mutations 57 endogenous ligands 57 membrane protein 57 viral isolates 57 overexpress 57 IMPDH 57 IgG4 57 epigenetically 57 LRP6 57 RANTES 57 exocytosis 57 cellularity 57 HMG CoA reductase 57 membrane proteins 57 cell lysate 57 haemagglutinin 57 GLUT1 57 phosphatases 57 SIRT2 57 TCF#L# 57 previously undescribed 57 differentially regulated 57 differentially expressed 57 biotinylated 57 ependymomas 57 receptor subunits 57 CHD5 57 fig. S2 57 IDH1 gene 57 tRNA 57 genetic heterogeneity 57 CDK4 57 biologic pathway 57 histone acetylation 57 EGF receptors 57 fusion protein 57 isoleucine 57 cellulase 57 condensin 57 Immunohistochemical analysis 57 Pol IV 57 mtDNA 57 VEGF receptor 57 iNOS 57 APOBEC3G 57 enveloped viruses 57 nucleolin 57 overexpressing cells 57 Entamoeba 57 multicellular organism 57 transferrin receptor 57 D. melanogaster 57 Pin1 57 binding affinities 57 haplogroups 57 gp# [002] 57 human leukocyte antigens 57 metazoans 57 antigenic 57 chromosomal rearrangement 57 trophoblast cells 57 methylation 57 CYP#C# [001] 57 carboxy terminal 57 Clusterin 57 Fc receptor 57 gene deletions 57 MMP# 57 gDNA 57 immunostaining 57 transgene 57 tropomyosin 57 Neuregulin 1 57 reverse transcriptase 57 CNTNAP2 57 herpesviruses 57 sRNAs 57 ErbB2 57 endogenous retroviruses 57 transactivation 57 actin binding 57 diploid 57 germline cells 57 c MYC 57 lysates 57 binding affinity 57 mRNA encoding 57 survivin 57 differentially expressed proteins 57 apical membrane 57 Plasmodium 57 #S subunit 57 coiled coil 57 putative biomarkers 57 FOXO3a 57 recombinants 57 catalytic subunit 57 transcription factor 57 Olig2 57 peptide antigens 57 genomic alterations 57 T#I [002] 57 transcriptional activation 56 gene expression patterns 56 MTHFR gene 56 Sox2 56 LRP5 56 potent inhibitors 56 androgen receptor gene 56 RAR beta 56 miRNA 56 5 hmC 56 histone H4 56 IgG1 56 variant allele 56 chromatin immunoprecipitation 56 phosphatase 56 SGK1 56 BRAF V#E 56 c Myc 56 hippocampal neurons 56 antisense strand 56 transcriptome profiling 56 progranulin gene 56 chromosome #q#.# [001] 56 microbial genomes 56 germinal center 56 constitutive activation 56 Vps# 56 micro RNAs 56 HipA 56 Histone 56 kinases 56 assay detects 56 inherited maternally 56 immunoglobulin genes 56 maize genome 56 rDNA 56 HER2 receptor 56 abnormal prion protein 56 MECP2 gene 56 squamous 56 lymphoid cells 56 proteases 56 chromatin proteins 56 MHC molecules 56 colorectal tumor 56 MT1 MMP 56 ERK signaling 56 Ubx 56 ribonuclease 56 #p# [003] 56 CRISPR Cas 56 MAPKs 56 constitutively activated 56 phylogenetically 56 insertion deletion 56 unmethylated DNA 56 glioblastoma cells 56 CPEB 56 familial ALS 56 posttranslational modification 56 synthetic peptides 56 cybrid 56 CD#c 56 osteoblastic 56 homologies 56 beta amyloid peptide 56 bacterium Escherichia coli 56 previously uncharacterized 56 NKX#.# 56 annexin V 56 apoptotic pathway 56 nucleolar dominance 56 inactive X chromosome 56 pilocytic astrocytomas 56 bcl 2 56 microarray datasets 56 BCR ABL 56 Enterobacteriaceae 56 proto oncogenes 56 HLA molecules 56 #S rRNA genes 56 ligases 56 suppressor gene 56 CYP#D# gene 56 DGGE 56 nitrogenase 56 crystallin 56 Prevotella 56 RNA extraction 56 protein kinases 56 inherited mutations 56 IGF2 56 glycolipids 56 proteome 56 receptor tyrosine kinase 56 allele frequency 56 chromatin immunoprecipitation ChIP 56 genetic polymorphisms 56 IFN gamma 56 Huntingtin 56 caveolin 1 56 encodes protein 56 breast epithelial cells 56 epistasis 56 tumor antigen 56 T#I mutant 56 segmental duplication 56 polynucleotides 56 histone code 56 demethylase 56 genomic variation 56 SNCA 56 RASSF1A 56 cytosine 56 RNA viruses 56 proteolytic 56 post translational modifications 56 γ secretase 56 RNase H 56 NS5B 56 aneuploid 56 CCR7 56 fatty acid synthesis 56 telomere DNA 56 genotypic 56 morphogen 56 clusterin 56 obligate intracellular 56 RFLP 56 HMGCR 56 KCNQ1 56 gene p# 56 fascin 56 secreted proteins 56 HepG2 cells 56 cDNA microarray 56 miR# 56 dermatophytes 56 Corynebacterium 56 mRNA 56 immunohistochemical 56 erythrocytes 56 disulfide bonds 56 cell adhesion molecule 56 methylation markers 56 budding yeast 56 TIMP 1 56 4E BP1 56 fig. S6 56 neuroligins 56 telomerase RNA 56 P cadherin 56 Fas ligand 56 phosphorylated tau 56 quasispecies 56 dephosphorylation 56 ChR2 56 miRNAs miR 56 Smad3 56 beta globin 56 PCR assay 56 zebrafish genome 56 PcG proteins 56 IDH2 56 phylogenetic trees 56 antisense oligonucleotides 56 HLAs 56 transgenic mouse model 56 ß catenin 56 DNA methylation 56 chromosomal aberrations 56 MTHFR 56 protein kinase C 56 HER2 HER3 56 adenocarcinomas 56 TEP1 56 lymphocytic 56 transfection efficiency 56 immunized mice 56 Cry1Ac 56 Alternative splicing 56 adhesion molecule 56 MLL2 56 JAK2 enzyme 56 quantitative PCR 56 antisense RNA 56 isogenic 56 #S ribosomal RNA 56 neuropilin 56 Western blotting 56 Sp1 56 IgA deficiency 56 multigenic 56 SDS PAGE 56 Akt1 56 TRAIL induced apoptosis 56 epithelial tumors 56 oncogenic 56 alpha synuclein protein 56 tumor suppressors 56 sCJD 56 chromosome #q 56 thioredoxin 56 GPx 56 allelic variants 56 mRNA molecule 56 transmembrane domains 56 moieties 56 PCA3 gene 56 secretory pathway 56 palladin 56 Arabidopsis plants

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