Related by context. All words. (Click for frequent words.) 76 clades 71 monophyletic 66 subfamily 66 taxa 65 serotype 65 lineages 63 haplogroup 61 haplogroups 61 phylogenetically 61 subfamilies 61 P. falciparum 61 orthologs 60 genus 60 morphologically 60 phylogeny 60 colugos 60 clade C 59 A. thaliana 59 H#N# isolates 59 Mus musculus 59 sensu lato 59 distinct lineages 59 homologs 59 amphioxus 59 superfamily 59 vesper bats 58 D. melanogaster 58 clade B 58 A. gambiae 58 Phylogenetic analysis 58 subgenus 58 subtypes 58 artiodactyls 58 genus Homo 58 phylogenetic 58 antigenically 58 SARS CoV 58 felis 58 alleles 58 homologous 58 genetically distinct 57 anthropoids 57 bilaterians 57 subtype 57 ZEBOV 57 metazoan 57 genera 57 elegans 57 angiosperm 57 albicans 57 ORFs 57 cytochrome b 57 phylogenetic tree 57 coronaviruses 57 H. influenzae 57 phylogeographic 57 mammalian genomes 57 gambiae 56 S. Typhimurium 56 fig. S1 56 placentals 56 placental mammals 56 primate lineage 56 capsular polysaccharide 56 robustus 56 phylogenies 56 Pan troglodytes 56 archaeal 56 virulence genes 56 theropod 56 genotypes 56 Homo genus 56 eukaryote 56 serogroup 56 serovar 56 sister taxon 56 Anopheles gambiae 56 viral genomes 56 paramyxoviruses 56 Symbiodinium 56 HBV genotype 56 phylum 56 serotypes 56 cnidarians 56 simian immunodeficiency virus 56 genetic lineages 56 phyla 55 dromaeosaurid 55 Buchnera 55 synuclein 55 H#N# influenza viruses 55 haemagglutinin 55 subsp 55 deuterostomes 55 D. simulans 55 clonally 55 H5 viruses 55 P. reichenowi 55 monotremes 55 defensin 55 evolutionary lineage 55 Supplementary Fig 55 endosymbiont 55 genetically divergent 55 phenotypically 55 HLA genes 55 coelurosaurs 55 C. albicans 55 SIVcpz 55 gigantea 54 filoviruses 54 arenaviruses 54 mitochondrial gene 54 avian H#N# 54 Diptera 54 Asteraceae 54 mammalian ancestor 54 Haplogroup 54 hominoids 54 endogenous retrovirus 54 heterozygous 54 taxon 54 2n = 54 C. neoformans 54 S. enterica 54 Rickettsia 54 mitochondrial genomes 54 bacterial symbiont 54 chordates 54 symbiont 54 hominid species 54 trimer 54 homolog 54 versicolor 54 Homo neanderthalensis 54 M. pneumoniae 54 T rubrum 54 C. jejuni 54 HTLV 54 intron 54 #S rRNA genes 54 neuraminidase NA 54 simian virus 54 mitochondrial genome 54 tetramers 54 alpha2 54 fig. S2 54 Coleoptera 54 angiosperms 54 unicellular 53 CagA 53 M. leprae 53 prokaryote 53 ornithischians 53 T. gondii 53 allelic variation 53 coronavirus 53 Supplementary Table 53 P. gingivalis 53 epitope 53 selfing 53 neutralizing antibody 53 theropods 53 archosaur 53 Lasius 53 H#N# viruses 53 poxvirus 53 genus Australopithecus 53 mycobacterium 53 missense mutations 53 outer membrane proteins 53 genotype 53 australopithecines 53 microsporidia 53 reproductively isolated 53 Haemophilus influenzae 53 operons 53 homozygosity 53 ciliated 53 membrane proximal 53 H5 strains 53 nucleotide sequence 53 introgression 53 eukaryotic 53 P. vivax 53 Archaea 53 mutant allele 53 amino acid sequences 53 tropicalis 53 jawed vertebrates 53 faunas 53 homo erectus 53 isoforms 53 commensal 53 canadensis 53 vivax 53 haplotype 53 alpha synuclein gene 53 glabrata 53 H. habilis 53 phylogenetic analysis 53 streptococcal 53 pseudogenes 53 T. brucei 53 sequence homology 53 bdelloid rotifers 53 CHIKV 53 endogenous retroviruses 53 subspecies 53 dermatophytes 53 homologue 53 amino acid residues 53 reassorted 52 H. erectus 52 ramidus 52 major histocompatibility complex 52 giganteus 52 reassortant viruses 52 morphologically distinct 52 microsatellite markers 52 Linheraptor 52 fig. S4 52 hoofed mammals 52 glycoprotein 52 suborder 52 corona virus 52 operon 52 S. cerevisiae 52 HMPV 52 primate species 52 neuraminidases 52 Caenorhabditis 52 Late Triassic 52 phospholipase 52 placental mammal 52 Enterobacteriaceae 52 hominoid 52 protein subunits 52 Leptospira 52 theropod dinosaurs 52 prokaryotes 52 ribosomal DNA 52 S. typhimurium 52 Carnivora 52 rDNA 52 picornavirus 52 sequenced genomes 52 Castorocauda 52 taxonomic 52 Fabaceae 52 mycobacteria 52 antigenically distinct 52 Serotype 52 flavivirus 52 angiosperms flowering plants 52 Bartonella 52 malarial parasites 52 japonicus 52 Mammalia 52 aculeatus 52 chimpanzees Pan troglodytes 52 defensins 52 biotype 52 Homo heidelbergensis 52 metazoans 52 ortholog 52 cynomolgus macaques 52 common ancestor 52 transmembrane protein 52 supertree 52 Coronavirus 52 japonica 52 avium 52 Y. pestis 52 mammalian species 52 Xenopus 52 mtDNA 52 gymnosperms 52 theropod dinosaur 52 isotypes 52 MC1R gene 52 Fig. 3b 52 ecotype 52 constitutively active 52 karyotype 52 GlcNAc 52 phenotypic variation 52 Plasmodium vivax 52 beta lactamases 52 Plasmodium 52 brucei 52 PB1 F2 52 V. cholerae 52 mtDNA sequences 52 taxonomically 52 cytochrome 52 Xenopus laevis 52 Yersinia enterocolitica 52 HLA B# 52 parainfluenza virus 52 archosaurs 52 PrP 51 erythrocytes 51 vesicular stomatitis virus 51 HAR1 51 viral strains 51 gene sequences 51 CDK4 51 lentiviruses 51 Prevotella 51 histone H3 51 Haemophilus 51 autosomal 51 substrate specificity 51 enteroviruses 51 Corynebacterium 51 catenin 51 Plasmodium knowlesi 51 endosymbiosis 51 Cucumis 51 Amborella 51 P. syringae 51 Typhi 51 homeobox genes 51 pipiens 51 herbivorous dinosaurs 51 Mycobacterium smegmatis 51 Anopheles 51 bacterial genomes 51 fungal genomes 51 haplotypes 51 arenavirus 51 B. subtilis 51 Fig. 1A 51 tyrannosaurids 51 indels 51 prion gene 51 tropomyosin 51 Nocardia 51 herpes viruses 51 heterozygote 51 evolutionarily 51 homologues 51 dromaeosaurs 51 species 51 sexually dimorphic 51 dynamin 51 monomeric 51 holotype 51 phylogenetic trees 51 hominid evolution 51 MLL gene 51 polynucleotide 51 Mycoplasma pneumoniae 51 serogroups 51 Plasmodium falciparum 51 tetanus toxin 51 pseudogene 51 VNTR 51 RNA sequences 51 molecular phylogenetic 51 paramyxovirus 51 nonpathogenic 51 hominins 51 Candida species 51 proteinase 51 epidermidis 51 S. neurona 51 Ehrlichia 51 Darwinopterus 51 vertebrates 51 dsRNA 51 orthologous 51 serologically 51 DENV 51 Trichinella 51 lymphoblastoid cell lines 51 receptor specificity 51 Fig. 51 At#g# 51 mangabeys 51 P. infestans 51 PON1 51 #S rDNA 51 Neisseria meningitidis 51 Nosema apis 51 ontogenetic 51 tRNA synthetase 51 Bacteroides 51 SMase 51 Fig. 1C 51 Arabidopsis genome 51 recombinants 51 herpesvirus 51 δ 51 eusocial 51 paradoxus 51 commensal bacteria 51 centromeres 51 phenotypic differences 51 Burkholderia 51 Flaviviridae 51 mutant strain 51 sialic acids 51 Vibrio cholerae 51 unmutated 51 vulgaris 51 terrestrial vertebrates 51 ratites 51 HERV K 51 sooty mangabeys 51 Volvox 50 immunized mice 50 homozygote 50 australis 50 evolutionarily conserved 50 F actin 50 Alu elements 50 lactis 50 monocots 50 coiled coil 50 M2e 50 mRNA transcripts 50 rotavirus strains 50 tetraploid 50 lymphoid cells 50 receptor gene 50 coevolution 50 cytosine 50 Simian Immunodeficiency Virus 50 #q#.# [002] 50 hepatoma 50 neutralizing antibody responses 50 pacificus 50 WSN/# 50 mammalian 50 missense mutation 50 seroprevalence 50 Proteobacteria 50 phenotype 50 Acropora 50 Fig. 1D 50 Heterodontosaurus 50 globin genes 50 plastids 50 hypervariable 50 rhinoviruses 50 parasitoid wasp 50 vertebrate 50 Plasmodium species 50 symbionts 50 rotaviruses 50 A. fumigatus 50 phenotypic traits 50 Acanthostega 50 indel 50 Streptococcus 50 extracellular domain 50 carnivorous mammals 50 amino acid substitution 50 Peromyscus 50 Salmonella serotypes 50 Enterococcus faecalis 50 Nosema ceranae 50 mosaicism 50 FMDV 50 TRIM5 50 homologies 50 centromeric 50 Gallus gallus 50 #p# [003] 50 microcephalin 50 Hemagglutinin 50 lobe finned fishes 50 Australopithecus africanus 50 SLC#A# [001] 50 A. sediba 50 subcellular compartments 50 homozygotes 50 sexual dimorphism 50 virus subtype 50 H. sapiens 50 cytotoxin 50 Late Devonian 50 outgroup 50 influenzae 50 reassortant 50 Early Cretaceous 50 brasiliensis 50 replicon 50 avian influenza viruses 50 Homo sapiens evolved 50 Pierolapithecus 50 prokaryotic 50 functional polymorphism 50 Ardipithecus 50 tiny single celled 50 MHC genes 50 thymine 50 mutant alleles 50 Paedocypris 50 intergenic regions 50 cathepsin B 50 HIV subtype 50 Neisseria 50 toothless beak 50 dinucleotide 50 homodimers 50 agouti 50 genetic sequences 50 #S rRNA 50 therizinosaurs 50 Kipunji 50 Trichophyton rubrum 50 aegypti 50 codons 50 Fig. 2C 50 arthropod 50 Phylogenetic 50 epitopes 50 cadherin 50 chordate 50 PtERV1 50 valine 50 chimp genomes 50 opsin 50 C#Y 50 africanus 50 fig. S3 50 maternally inherited 50 Arabidopsis 50 heterodimer 50 proteobacteria 50 Rhesus Macaque 50 tRNA genes 50 marinus 50 monozygotic twins 50 meristem 50 chromosome #q# [001] 50 3' UTR 50 tetramer 50 uPAR 50 Phytophthora species 50 introns 50 superinfection 50 S. sanguinis 50 Pongo pygmaeus 50 mammalian predators 50 IFN alpha 50 S. pyogenes 50 allele 50 avian dinosaurs 49 P aeruginosa 49 HPAI H#N# 49 Homo species 49 C#BL 6 49 cysteine protease 49 annelid worms 49 animal phyla 49 L. pneumophila 49 dimeric 49 D#G 49 echinoderms 49 Fig. 2a 49 midgut 49 endophytic 49 coinfection 49 gametophyte 49 V3 loop 49 STAT4 49 Gigantopithecus 49 eukaryotes 49 activin 49 Treponema pallidum 49 LB1 49 coexpression 49 subunit 49 suppressor gene 49 P vivax 49 capsid proteins 49 human metapneumovirus 49 H#N# subtype 49 biogeographic 49 anomodonts 49 erectus 49 intergenic 49 Bacillus 49 #S rRNA gene 49 TCF#L# gene 49 Mycobacterium bovis 49 coding sequences 49 orientalis 49 cytopathic 49 hantaviruses 49 antibody responses 49 Paranthropus robustus 49 CRISPR 49 CD1d 49 H. floresiensis 49 carboxy terminal 49 endonuclease 49 epidermal cells 49 KIAA# 49 nucleotide substitution 49 Chlamydophila pneumoniae 49 Homo ergaster 49 GenBank accession 49 MDCK cells 49 genetic heterogeneity 49 surface proteins hemagglutinin 49 idiotype 49 polyploid 49 Figs. 49 habilis 49 maternal lineages 49 MRSA isolates 49 Wolbachia 49 spirochetes 49 chloroplast genome 49 Homo sapiens 49 pox virus 49 outbred 49 MECP2 gene 49 TERT 49 pathogenic strain 49 pneumoniae 49 variola 49 Orrorin tugenensis 49 Confuciusornis 49 sialic acid 49 overexpressing 49 PRRSV 49 Rap1 49 deletion mutant 49 antigenic 49 segmental duplications 49 alternatively spliced 49 Denisovan 49 K#R [002] 49 nucleotide sequences 49 A. africanus 49 trypanosome 49 H#Y 49 ectodomain 49 Babesia 49 Borrelia 49 S. pneumoniae 49 evolutionary divergence 49 avian flu viruses 49 quasispecies 49 Sinosauropteryx 49 femora 49 C. trachomatis 49 diploid 49 ciliates 49 oligomeric 49 rufa 49 multicellular organisms 49 amino terminal 49 morphologies 49 antibody titers 49 paralogs 49 RNA viruses 49 rubrum 49 phylogenetic relationships 49 sativum 49 Sahelanthropus tchadensis 49 archaea 49 phylogenetic analyzes 49 Brassicaceae 49 polymorphisms 49 synaptotagmin 49 bryozoans 49 nucleotide substitutions 49 avian H#N# influenza 49 MEFs 49 cyclin 49 neuraminidase 49 lactamases 49 SARS coronavirus 49 ultraconserved elements 49 Fig. 1E 49 meningococcus 49 vertebrate evolution 49 LIS1 49 herpesviruses 49 Ventastega 49 humanus 49 eukaryotic organisms 49 PON1 gene 49 landraces 49 carboxyl terminal 49 morphological evolution 49 gametocytes 49 HLA B 49 heterozygotes 49 Toxoplasma gondii 49 HCV genotype 49 Hendra viruses 49 Solanaceae 49 ribosomal RNA 49 Bifidobacterium 49 D#N 49 androgen receptor AR 49 #S ribosomal RNA 49 cDNA sequences 49 opportunistic pathogen 49 E. faecalis 49 heritable traits 49 Anopheles funestus 49 thermophilum 49 Neanderthal genes 49 coding genes 49 serpin 49 serine protease 49 phosphorylate 49 ADH1B * 49 etiologic agent 49 capsid protein 49 #p#.# [001] 49 lamina 49 keratins 49 Ebola Reston 49 dimers 49 mannose 49 SIV infection 49 epistasis 49 distantly related species 49 ApoE 49 chromatid 49 SRY gene 49 Salmonella enterica 49 avian strain 49 phenotypic characteristics 49 glycosylated 49 hippocampal neurons 49 C. perfringens 49 avian swine 49 laminin 49 Nasonia 48 chromosomal translocations 48 freshwater snails 48 cytoplasmic domain 48 transmissible spongiform encephalopathies 48 feathered dinosaurs 48 CpG 48 cowpox virus 48 glycoproteins 48 FLT3 48 synteny 48 cytoplasmic tail 48 gracile 48 spontaneous mutation 48 bony fishes 48 Toxoplasma 48 hominid 48 genes encoding 48 distinct subtypes 48 Trypanosoma brucei 48 arthropods 48 miRNAs miR 48 floresiensis 48 KIF6 gene 48 eusociality 48 bufo 48 multidrug resistant 48 mtDNA sequence 48 Chlamydomonas reinhardtii 48 flatworms 48 Clostridia 48 allelic variants 48 heterologous 48 NNRTI resistance 48 genuses 48 Comparative genomics 48 morphological similarities 48 immunologically 48 hemagglutinin H 48 carnivorous mammal 48 plectasin 48 cofactor 48 activating mutations 48 HLA alleles 48 Fig. 3A 48 Chlamydomonas 48 type II pneumocytes 48 antigenic epitopes 48 extracellular domains 48 Figure 2C 48 HLA DRB1 * 48 streptococci 48 ribosomal protein 48 genus homo 48 oryzae 48 placoderms 48 differentially expressed genes 48 lactase persistence 48 Aspergillus oryzae 48 dizygotic twins 48 hemagglutinin 48 Y chromosomal 48 P. ovale 48 pallida 48 mya 48 genetic loci 48 Massospondylus 48 ribosomal proteins 48 H#Y mutation 48 Culicoides 48 MAPK pathway 48 olfactory receptor 48 μg ml 48 Helicobacter 48 ncRNA 48 cDNAs 48 sexually reproducing 48 seasonal influenza viruses 48 primordial germ cells 48 Neandertals 48 intronic 48 PrPSc 48 Typhimurium 48 trypanosomes 48 lysine residues 48 microRNA miR 48 Homo antecessor 48 CCR5 delta# 48 somites 48 Brusatte 48 amino acid sequence 48 previously undescribed 48 symbioses 48 conserved sequences 48 annelids 48 Francisella tularensis 48 chick embryo 48 chromosome #q#.# [001] 48 Brucella abortus 48 flaviviruses 48 transmembrane receptor 48 EGFR mutations 48 flatworm 48 immunodominant 48 albopictus 48 sooty mangabey 48 mutation 48 Genetic variation 48 female gametophyte 48 proline rich 48 intestinalis 48 Mycoplasma genitalium 48 imprinted genes 48 biotypes 48 proteolytic cleavage 48 noncoding 48 Archaeopteryx 48 T. vaginalis 48 NRTI resistance 48 highly pathogenic H#N# 48 karyotypes 48 isomerase 48 bivalent 48 Entamoeba 48 intermedius 48 EBV infection 48 Guanlong 48 Plasmodium parasite 48 HLA gene 48 B. henselae 48 Panderichthys 48 PBMCs 48 exon 48 poxviruses 48 pig tailed macaques 48 cyclin dependent kinase 48 teosinte 48 Alleles 48 Francisella 48 clouded leopard 48 sympatric speciation 48 M. anisopliae 48 amino acid residue 48 genomic sequence 48 Australopithecines 48 A. ramidus 48 protozoan parasite 48 posttranslational modifications 48 ZNF# 48 chimpanzee Pan troglodytes 48 mammalian organisms 48 HLA DRB1 48 thymosin 48 Juravenator 48 swine influenza viruses 48 replikin 48 spp 48 arthropod species 48 QTLs 48 Bacillus subtilis 48 BRSV 48 piRNAs 48 simulans 48 peptidoglycan 48 chinensis 48 plastid 48 staphylococci 48 influenza viruses 48 highly pathogenic strains 48 microbiomes 48 crinoids 48 antigen binding 48 parthenogenetic 48 HLA molecules 48 pandemic influenza virus 48 stilbene 48 Leishmania 48 isoenzymes 48 Fig. 1c 48 C4 grasses 48 inbred strains 48 genetic variability 48 worm C. elegans 48 ontogeny 48 pathogenic 48 fluoroquinolone resistant 48 swine origin 48 orthologous genes 48 retrovirus 48 Mycobacterium leprae 48 X4 viruses 48 protists 48 M. genitalium 48 steppe mammoth 48 ESBLs 48 Sinornithosaurus 48 hemagglutinin HA 48 formosa 48 polymorphism 48 Indohyus 48 Collembola 48 neuraminidase N 48 Streptomyces 48 NS4A 48 Osedax 48 Bifidobacterium longum 48 P falciparum 48 phenotypes 48 Fruitadens 48 protozoan 48 trimers 48 pyogenes 48 Tertiary Period 48 NS1 protein 48 Xenopus tropicalis 48 lagomorphs 48 Salmonella typhi 48 chromosomal DNA 48 linkage disequilibrium 48 viral genome 48 falciparum 48 Neandertal 48 rRNA 48 VLPs 48 Saccharomyces 48 reoviruses 48 caveolin 48 Schistosoma 48 Fig. 3B 48 unmethylated 48 BARD1 48 dimorphic 48 protozoans 48 Fig. 2A 48 C#BL/#J 48 HBV genotypes 48 rhesus 48 Wwox 48 antarctica 48 species Homo sapiens 48 methyltransferase 48 NF1 gene 48 S. mansoni 48 Orrorin 48 protist 48 cagA 48 red colobus 48 monotreme 48 allele frequency 48 C3b 48 genomic sequences 48 S. aureus strains 48 Geomyces 48 CpG DNA 48 mutated 48 untranslated regions 47 transgene expression 47 cysteine residues 47 heterozygosity 47 single celled yeast