Related by context. All words. (Click for frequent words.) 76 clade 74 monophyletic 74 lineages 71 distinct lineages 69 subfamilies 69 taxa 69 archaeal 68 haplogroups 68 phyla 68 orthologs 68 genetic lineages 68 subfamily 68 missense mutations 67 homologs 67 phylogenetically 67 A. thaliana 66 subtypes 66 phylogenies 66 phylogeny 66 haplogroup 66 morphologically 66 operons 65 ORFs 65 phylogenetic 65 eukaryote 64 orthologous 64 C. jejuni 64 subgenus 64 haplotypes 64 sensu lato 64 clade B 64 #S rRNA 64 serotype 64 vesper bats 63 cytochrome b 63 cDNAs 63 mammalian genomes 63 paralogs 63 P. falciparum 63 amino acid sequences 63 H#N# isolates 63 prokaryotes 63 S. cerevisiae 63 microsatellite markers 63 gambiae 63 bilaterians 63 phylogenetic trees 63 amino acid residues 63 SARS CoV 63 intergenic 63 placentals 63 metazoan 63 phylogenetic tree 63 clonally 63 M. pneumoniae 63 mitochondrial genomes 63 isoforms 62 coding sequences 62 paramyxoviruses 62 T. brucei 62 mitochondrial gene 62 genera 62 indels 62 amphioxus 62 nucleotide sequence 62 Archaea 62 #S rRNA genes 62 deuterostomes 62 alleles 62 vivax 62 P. reichenowi 62 neuraminidases 62 D. melanogaster 62 eukaryotic 62 Prevotella 62 S. Typhimurium 62 bacterial genomes 62 trimer 62 surface proteins hemagglutinin 62 sequenced genomes 62 placental mammals 62 Mus musculus 61 C. neoformans 61 coronaviruses 61 T rubrum 61 RNA sequences 61 virulence genes 61 intergenic regions 61 serovar 61 serotypes 61 fungal genomes 61 hominoids 61 genotypes 61 haplotype 61 HLA genes 61 gene sequences 61 phenotypic variation 61 colugos 61 phylogenetic analyzes 61 subtype 61 evolutionary lineage 61 chordates 61 S. aureus strains 61 monozygotic twins 61 phenotypically 61 antigenically 61 amino acid sequence 61 viral genomes 61 ciliated 61 sequence homology 61 prokaryote 61 Typhi 61 conserved sequences 61 isotypes 61 H5 viruses 60 genetic loci 60 phylogeographic 60 clade C 60 angiosperm 60 H#N# viruses 60 RNA viruses 60 capsular polysaccharide 60 inbred strains 60 genetically distinct 60 loci 60 staphylococci 60 Phytophthora species 60 fig. S1 60 viral strains 60 taxon 60 outer membrane proteins 60 MRSA isolates 60 serogroups 60 A. gambiae 60 #S rRNA gene 60 cnidarians 60 QTLs 60 VNTR 60 immunized mice 60 mtDNA 60 phenotypic differences 60 Supplementary Fig 60 phylogenetic relationships 60 SIVcpz 60 serogroup 60 Amborella 60 herpes viruses 60 HBV genotype 60 introgression 60 genes encoding 60 mycobacteria 60 pseudogenes 60 epitopes 60 endosymbiosis 60 membrane proximal 59 differentially expressed genes 59 prokaryotic 59 T. gondii 59 symbiont 59 cDNA libraries 59 polynucleotide 59 Volvox 59 subsp 59 morphologically distinct 59 phylogenetic analysis 59 peptide sequences 59 tetramers 59 Plasmodium 59 protein subunits 59 Alu elements 59 genus 59 extracellular domain 59 #S rDNA 59 H#N# influenza viruses 59 animal phyla 59 Candida species 59 indel 59 Plasmodium vivax 59 allele frequencies 59 Phylogenetic analysis 59 eukaryotic genomes 59 epistasis 59 mtDNA sequences 59 glabrata 59 artiodactyls 59 introns 59 mutant strains 59 homologues 59 phenotypic traits 59 dermatophytes 59 tRNA genes 59 Plasmodium falciparum 59 Enterobacteriaceae 59 Homo neanderthalensis 59 felis 59 C. albicans 59 gene duplications 59 chromosome #q# [001] 59 monocots 59 Haplogroup 59 Plasmodium species 59 coexpression 59 superfamily 59 nucleotide substitutions 59 Genotypes 59 diploid 59 mycobacterium 59 monotremes 59 genetically divergent 59 P. gingivalis 59 homologies 59 archaea 59 S. enterica 59 Buchnera 59 codons 59 allelic variation 59 gymnosperms 59 splice variants 59 causal variants 59 Trichophyton rubrum 59 homozygosity 59 coevolution 59 microcephalin 58 flavivirus 58 female gametophyte 58 ZEBOV 58 malarial parasites 58 tRNA synthetase 58 ncRNAs 58 herpesviruses 58 synuclein 58 Anopheles gambiae 58 phenotypic characteristics 58 Asteraceae 58 Supplementary Table 58 Simian Immunodeficiency Virus 58 CHIKV 58 eukaryotic organisms 58 Yersinia enterocolitica 58 rotaviruses 58 epidermidis 58 primate lineage 58 nucleotide sequences 58 #q#.# [002] 58 Salmonella serotypes 58 evolutionary lineages 58 distinct subtypes 58 clonal 58 bdelloid rotifers 58 falciparum 58 albicans 58 valine 58 H5 strains 58 spontaneous mutations 58 histone modifications 58 angiosperms 58 Acropora 58 intronic 58 swine influenza viruses 58 arenaviruses 58 subpopulations 58 protozoans 58 serologically 58 S. pyogenes 58 supertree 58 endosymbiont 58 M. anisopliae 58 M. genitalium 58 commensal 58 reproductively isolated 58 proteobacteria 58 K#R [002] 58 lentiviruses 58 MHC genes 58 centromeres 58 Neisseria 58 Bacteroides 58 capsid protein 58 prion strains 58 substrate specificity 58 angiosperms flowering plants 58 PFGE 58 glycoproteins 58 annelid worms 58 deletion mutant 57 metazoans 57 resistant isolates 57 evolutionary relatedness 57 neuraminidase 57 Flaviviridae 57 operon 57 homologous 57 H. influenzae 57 limbed vertebrates 57 outbred 57 mutant allele 57 taxonomically 57 proteomes 57 mammalian organisms 57 synteny 57 mammalian ancestor 57 Rickettsia 57 avium 57 gametocytes 57 fluoroquinolone resistant 57 Arabidopsis genome 57 vertebrate genomes 57 piRNAs 57 epitope 57 subcellular compartments 57 yeast genome 57 ecotypes 57 blastomeres 57 trypanosome 57 faunas 57 haemagglutinin 57 TACI mutations 57 genotypic 57 fig. S2 57 uPAR 57 genetic heterogeneity 57 commensal bacteria 57 species 57 pneumoniae 57 swine origin 57 plastids 57 cytopathic 57 phylum 57 rhinoviruses 57 cynomolgus macaques 57 chromosomal DNA 57 endonuclease 57 prion gene 57 orthologous genes 57 homodimers 57 germline mutations 57 mRNA molecules 57 brucei 57 Hemagglutinin 57 nucleotide substitution 57 IgA deficiency 57 genomic sequences 57 ribosomal DNA 57 Phylogenetic 57 microsporidia 57 At#g# 57 M. leprae 57 ecotype 57 terrestrial vertebrates 57 rotavirus strains 57 Nosema apis 57 KIAA# 57 filoviruses 57 methylation patterns 57 soluble proteins 57 untranslated regions 57 homozygotes 57 coding genes 57 S. pneumoniae 57 neuraminidase NA 57 ribozyme 57 dinucleotide 57 maternally inherited 57 ornithischians 57 molecular subtypes 57 corona virus 57 chromosome #q#.# [001] 57 intermedius 57 Phylogenetic analyzes 57 allelic variants 57 influenza subtypes 57 noncoding RNAs 57 posttranslational modifications 57 D. simulans 57 segmental duplications 57 microbiomes 57 rRNA 57 chromosomal regions 57 Y. pestis 57 trimers 57 endogenous retroviruses 57 polyploid 57 serine threonine kinases 56 mosaicism 56 amplicons 56 ultraconserved elements 56 erythrocytes 56 major histocompatibility complex 56 TRIM5 56 P falciparum 56 viral isolates 56 human metapneumovirus 56 HLA DRB1 56 biotypes 56 linkage disequilibrium 56 intron 56 hepatoma 56 elegans 56 phospholipase 56 Wolbachia 56 Dehalococcoides 56 metagenomes 56 Salmonella enterica 56 anomodonts 56 A. fumigatus 56 funestus 56 primate species 56 nonpathogenic 56 ribosomal RNA 56 eukaryotic cells 56 trinucleotide 56 Trypanosoma brucei 56 rDNA 56 ribosomal proteins 56 amino acid substitutions 56 Leptospira 56 transmembrane protein 56 Serotype 56 antigenic 56 beta lactamases 56 contigs 56 dizygotic twins 56 unicellular 56 heterochromatic 56 CagA 56 eukaryotes 56 globular proteins 56 chordate 56 mRNA transcripts 56 lymphoblastoid cell lines 56 morphologies 56 bryozoans 56 Fig. 2A 56 L. pneumophila 56 genome rearrangements 56 B. subtilis 56 histocompatibility 56 teosinte 56 avian H#N# influenza 56 bacterial symbiont 56 breast cancer subtypes 56 Pseudomonas syringae 56 fluoroquinolone resistance 56 recombinants 56 chloroplast genome 56 Fig. 1A 56 Proteobacteria 56 phenotypes 56 Chlamydomonas 56 H. erectus 56 neutralizing antibody responses 56 cysteine residues 56 proline rich 56 C. trachomatis 56 V3 loop 56 H. habilis 56 Micromonas 56 enterotypes 56 tetraploid 56 primate genomes 56 fig. S4 56 V. cholerae 56 H#Y 56 causative agents 56 hemoglobins 56 Vibrio cholerae 56 DNA transposons 56 enolase 56 multicellular organisms 56 simian immunodeficiency virus 56 defensin 56 Mycobacterium smegmatis 56 vertebrate evolution 56 flaviviruses 56 CRISPR 56 genetic sequences 56 lactis 56 imprinted genes 56 BAC clones 56 Caenorhabditis 56 heterologous 56 S. maltophilia 56 spontaneous mutation 56 Xenopus 56 protein kinases 56 mitochondrial genome 56 prion protein gene 56 cis regulatory 56 genus Homo 56 nucleotide 56 Trichinella 56 etiologic agent 56 homologous genes 56 P. vivax 56 C#BL 6 56 heterodimers 56 phenotype 56 invertebrate animals 56 Vps# 56 karyotypes 55 theropods 55 virulence factors 55 mtDNA sequence 55 ciliates 55 symbioses 55 replicon 55 H#K#me# 55 Aspergillus species 55 mutant strain 55 A. sediba 55 proviral DNA 55 genetic relatedness 55 MLL gene 55 neutralizing antibody 55 morphological traits 55 M2e 55 HLA alleles 55 Typhimurium 55 chimp genomes 55 avian influenza viruses 55 heterozygotes 55 ABCB1 gene 55 Fig. 2a 55 Mycoplasma pneumoniae 55 Prochlorococcus 55 CRISPR Cas 55 mutational 55 dsRNA 55 ALK mutations 55 reassorted 55 molecular phylogenetic 55 chromosomal rearrangements 55 CpG 55 coding exons 55 androgen receptor AR 55 tetramer 55 Enterococcus faecalis 55 hemagglutinin HA 55 autosomal 55 Corynebacterium 55 jawed vertebrates 55 subspecies 55 somatic mutations 55 mammalian evolution 55 poxvirus 55 oligomeric 55 enteroviruses 55 nucleolar 55 kDa protein 55 hemagglutinin gene 55 isotopic compositions 55 maternal lineages 55 mutant alleles 55 B. cereus 55 avian H#N# 55 homeobox genes 55 quasispecies 55 P. ovale 55 C#Y 55 HMPV 55 lysine residues 55 bacterial strains 55 Mycobacterium 55 transgenes 55 D#N 55 hominid species 55 miRNAs 55 Comparative genomics 55 bacteria archaea 55 nucleocapsid 55 glycosylated 55 endophytic 55 Penicillium 55 immunodominant 55 chimpanzee genomes 55 breast carcinomas 55 evolutionarily conserved 55 canadensis 55 N. gonorrhoeae 55 defensins 55 MDCK cells 55 T. vaginalis 55 MenB strains 55 landraces 55 Neisseria meningitidis 55 biosynthetic pathways 55 globin genes 55 virulence determinants 55 single celled yeast 55 normal prion protein 55 miRNAs miR 55 mammalian genome 55 mycobacterial 55 mutations 55 common ancestor 55 picornavirus 55 polymorphisms 55 HPAI H#N# 55 dengue viruses 55 nucleoprotein NP 55 salivary proteins 55 FGFR2 55 fig. S3 55 virus subtype 55 tRNA synthetases 55 UTRs 55 intraspecific 55 Xenopus laevis 55 Saccharomyces 55 GlcNAc 55 Streptomyces 55 Chlamydophila pneumoniae 55 K. pneumoniae 55 heterozygous 55 cytosine 55 GenBank accession 55 cytoplasmic domain 55 MC1R gene 55 #q# [001] 55 Eukaryotes 55 hyphae 55 transcriptomes 55 2n = 55 ectodomain 55 arthropod species 55 hamartomas 55 tyrannosaurids 55 parainfluenza virus 55 lactase persistence 55 PBMCs 55 TCF#L# gene 55 mammalian species 55 transmembrane proteins 55 allelic 55 gametophyte 55 Anopheles 55 non coding RNA 55 ncRNA 55 biogeographic 55 pandemic influenza virus 55 denaturing gradient gel electrophoresis 55 sRNAs 55 ESBLs 55 paradoxus 55 thermophilum 54 HHV 6 54 eusocial 54 H#N# subtype 54 hoofed mammals 54 DLC1 54 MECP2 gene 54 PKD1 54 Fig. 1D 54 botulinum neurotoxins 54 Streptococcus pyogenes 54 subunits 54 extracellular domains 54 Candida albicans 54 Haemophilus influenzae 54 amino acid substitution 54 viral subtypes 54 avian species 54 enveloped viruses 54 budding yeast 54 hantaviruses 54 metalloprotease 54 hemagglutinin 54 pneumococcal serotypes 54 δ 54 short hairpin RNAs 54 cyanobacterial 54 N acetyltransferase 54 Homo species 54 genomic sequence 54 monozygotic 54 genotype 54 cichlid species 54 functional polymorphism 54 Rap1 54 HLA B# 54 Alleles 54 Enterobacter 54 antigenically distinct 54 constitutively active 54 mesotheliomas 54 Nocardia 54 ecoregions 54 somites 54 alpha2 54 IgG1 54 FLT3 54 eukaryotic cell 54 homology 54 antigenic shift 54 recombination hotspots 54 microsatellite loci 54 miRNA sequences 54 selfing 54 Propionibacterium 54 LRRK2 gene 54 kilobase 54 biotype 54 transposable elements 54 antibody responses 54 trypanosomes 54 chloroplast 54 microbial genomes 54 transmembrane 54 bacterial isolates 54 differentially regulated 54 HPV# 54 coelurosaurs 54 M. bovis 54 Woese 54 vesicular stomatitis virus 54 S. sanguinis 54 Y chromosomal 54 autosomes 54 #S ribosomal RNA 54 Candida glabrata 54 Fig. 3b 54 distantly related species 54 dimers 54 chimpanzees Pan troglodytes 54 lithological units 54 replicase 54 miRNA genes 54 vacuolar 54 evolutionary divergence 54 ramidus 54 lung adenocarcinomas 54 #p#.# [001] 54 Kipunji 54 IgG4 54 Hsp# [001] 54 monomeric 54 arenavirus 54 epidermal cells 54 Pan troglodytes 54 bryophytes 54 sympatric speciation 54 previously undescribed 54 replikin 54 var genes 54 spirochetes 54 seroprevalence 54 symbionts 54 protists 54 Brassicaceae 54 chloroplasts 54 heterozygote 54 parasitoid wasp 54 Fig. 1C 54 de novo mutations 54 Salmonella typhi 54 Mycobacterium bovis 54 Epstein Barr virus EBV 54 Homo genus 54 morphological characteristics 54 PTPN# 54 theropod dinosaurs 54 reassortants 54 femora 54 unicellular organisms 54 IFN alpha 54 Yersinia 54 viral RNA 54 lobe finned fishes 54 chromosome #q#.# [002] 54 WSN/# 54 proteolytic cleavage 54 VLPs 54 antibody titers 54 Mycobacterium leprae 54 medulloblastomas 54 S. neurona 54 Fabaceae 54 dimeric 54 sialic acids 54 H#Y mutation 54 virions 54 substituents 54 phage 54 granulocytes 54 NRTI resistance 54 noncoding 54 miRNA molecules 54 fungal pathogens 54 superinfection 54 antisera 54 serum antibodies 54 cellulases 54 viral antigens 54 mucosal immunity 54 reverse transcriptase inhibitors 54 intestinalis 54 transcriptome 54 Drosophila genome 54 CD1d 54 de novo synthesis 54 PB1 F2 54 taxonomic 54 cDNA library 54 flatfishes 54 Pol IV 54 ovules 54 K#N 54 ependymomas 54 sCJD 54 gene expression profiles 54 diatom species 54 aegypti 54 vertebrate 54 R#W [002] 54 ESBL producing 54 karyotype 54 polypeptide chain 54 thymine 54 selective antagonists 54 isotype 54 pathogenic strain 54 synthases 54 Trichoplax 54 lysates 54 Chlamydia trachomatis 54 biogeographical 54 HAR1 54 neuraminidase N 54 Mycobacterium tuberculosis 54 vertebrate species 54 endogenous retrovirus 54 MDRSP 54 peptide antigens 54 genes encode 54 KCNQ1 54 Neu5Gc 54 H. sapiens 54 dromaeosaurs 54 NS4A 53 bcl 2 53 influenzae 53 pseudogene 53 amino terminal 53 heritable traits 53 herbivorous dinosaurs 53 Streptococcus agalactiae 53 olivines 53 splice junctions 53 PrPSc 53 Plasmodium parasite 53 Haemophilus 53 ortholog 53 constitutively expressed 53 sequence tags ESTs 53 MAPK pathway 53 NNRTI resistance 53 centromeric 53 PAX5 53 histologic subtypes 53 Lassa virus 53 yeast Saccharomyces cerevisiae 53 segmental duplication 53 cathepsin B 53 C. perfringens 53 versicolor 53 enantiomers 53 humanus 53 genomic DNA 53 sexually dimorphic 53 serine protease 53 primitive vertebrates 53 protein encoded 53 microdeletions 53 CCL#L# 53 LIS1 53 Mammalia 53 conifers ferns 53 chromosome #p#.# 53 polymerases 53 peroxidase 53 nucleobases 53 Strep bacteria 53 microRNA molecules 53 ERK2 53 HBV genotypes 53 gene expression patterns 53 cellular organelles 53 RNA polymerases 53 eusociality 53 bacteria Pseudomonas 53 allele frequency 53 theropod 53 mitochondrial DNA mtDNA 53 Wolbachia infection 53 papillomas 53 IFN gamma 53 odorants 53 aneuploid 53 MRSA strains 53 HCMV 53 thioredoxin 53 S aureus 53 Bifidobacterium 53 chromatid 53 humans Homo sapiens 53 glycolipids 53 genes differentially expressed 53 reoviruses 53 sporadic ALS 53 genetic variability 53 HCV replicon 53 pathogenic strains 53 causative mutation 53 placental mammal 53 influenza viruses 53 pathogenic mutations 53 pneumococci 53 Dictyostelium 53 rs# [001] 53 miRNA expression 53 Th2 responses 53 sexually reproducing 53 causative agent 53 HLA molecules 53 hepatocellular carcinomas 53 adduct 53 genomes 53 lactobacilli 53 habilis 53 Plasmodium parasites 53 bacterial pathogen 53 peptidoglycan 53 Candidatus 53 homodimer 53 missense mutation 53 anthropoids 53 cathepsins 53 Arabidopsis plants 53 isotope ratios 53 NF1 gene 53 S. typhimurium 53 Treponema pallidum 53 Multidrug resistant 53 evolutionarily distant 53 Late Triassic 53 Burkholderia 53 biogenesis 53 PRNP 53 organism genome 53 hemagglutinin H 53 heterozygosity 53 cysteine protease 53 protein fragment 53 RANTES 53 Streptococcus pneumoniae 53 helices 53 site directed mutagenesis 53 epigenetic regulation 53 retinoid X 53 suppressor gene 53 deacetylation 53 DNA sequences 53 japonicus 53 P. infestans 53 serotype #A 53 Anopheles gambiae mosquito 53 GBM tumors 53 Saccharomyces cerevisiae 53 fungal strains 53 hemagglutinin protein 53 PCR amplified 53 genuses 53 tropicalis 53 avian dinosaurs 53 polymorpha 53 centromere 53 proteins encoded 53 robustus 53 vertebrates 53 rifamycins 53 choanoflagellates 53 ribonuclease 53 capsid proteins 53 Firmicutes 53 sialic acid 53 epigenetically 53 hominoid 53 lymphoid cells 53 supercontinent Pangaea 53 IDH1 gene 53 NS1 protein 53 neuroligins 53 single celled organisms 53 polypeptide 53 teratoma 53 BARD1 53 mammalian 53 cDNA sequences 53 mimivirus