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(Click for frequent words.) 77 Arabidopsis thaliana 69 A. thaliana 67 plant Arabidopsis thaliana 65 plant Arabidopsis 64 mitochondrial gene 64 Saccharomyces cerevisiae 64 chloroplast 64 Arabidopsis plants 63 auxin 63 C. elegans 62 Drosophila 62 synthase 62 genes encoding 62 centromeres 62 Caenorhabditis elegans 62 Argonaute 62 arabidopsis 61 alternatively spliced 61 vernalization 61 fission yeast 61 S. cerevisiae 61 budding yeast 61 thale cress 61 paralogs 61 Chlamydomonas 61 RNA sequences 61 plastid 61 abscisic acid 61 acetylation 61 transgenes 60 noncoding RNAs 60 eukaryotic 60 polyploid 60 ubiquitination 60 heterochromatin 60 mammalian cells 60 homologs 60 Arabidopsis genome 60 rRNA 60 chloroplasts 60 transcriptome 59 PcG proteins 59 abscission 59 Drosophila melanogaster 59 transcriptional regulation 59 centromeric 59 uPAR 59 diploid 59 miRNAs 59 QTLs 59 nodulation 59 Amborella 59 transgene 59 constitutively 59 proteolysis 59 teosinte 59 site directed mutagenesis 59 Agrobacterium 59 cDNAs 58 transcriptional repressor 58 proteases 58 P. patens 58 isoforms 58 selfing 58 yeast Saccharomyces cerevisiae 58 Cdc# 58 #S rRNA 58 gene expression 58 homodimers 58 transcriptional 58 polyploidy 58 transmembrane protein 58 mycorrhizal fungi 58 quantitative trait loci 58 cDNA 58 P. gingivalis 58 enzymatic activity 58 histone H4 58 transcription factors 58 Bt toxins 58 genotypes 58 mitogen activated protein kinase 58 presenilin 58 H#K# [002] 58 maize genome 58 beta actin 57 N. benthamiana 57 morphogen 57 plastids 57 operon 57 proteins 57 transcriptional activation 57 tetramers 57 nematode worm 57 homeobox gene 57 orthologs 57 overexpressing 57 biosynthesis 57 homeobox genes 57 tRNA synthetase 57 phenotypes 57 phosphorylation 57 miRNA expression 57 chromatin structure 57 glycosylation 57 mutagenesis 57 CYP#B# 57 cotyledon 57 cytosine methylation 57 genes 57 Rubisco 57 LRRK2 57 lipoxygenase 57 phytochrome 57 Photosystem II 57 heterodimers 57 homolog 57 CTCF 57 inducible 57 rRNA genes 57 RecA 57 RNA splicing 57 biotypes 57 defensin 57 glycoproteins 57 ortholog 57 meristem 57 c myc 57 fruit fly Drosophila 57 TMEM#B 57 chaperone proteins 57 ncRNA 57 proline 57 C. albicans 57 Brachypodium 57 ncRNAs 57 transgene expression 57 photosynthetic 57 membrane protein 57 metazoans 56 piRNAs 56 lysine residues 56 ribosomal protein 56 chloroplast genome 56 homologues 56 nitrogen fixation 56 DLC1 56 homologue 56 downregulated 56 B. subtilis 56 JAK STAT 56 rhizobia 56 imprinted genes 56 nematode 56 ChIP seq 56 eukaryote 56 endonuclease 56 alternative splicing 56 histone H3 56 Clusterin 56 ubiquitylation 56 evolutionarily conserved 56 phosphorylates 56 transgenic plants 56 MAPK 56 At#g# 56 MALAT1 56 ectopic expression 56 root knot nematode 56 transcriptomes 56 tRNA 56 cathepsin 56 enolase 56 histone modifications 56 untranslated regions 56 epigenetic silencing 56 secretory pathway 56 nematodes 56 palladin 56 metazoan 56 eukaryotic cell 56 MAPKs 56 Drosha 56 proto oncogene 56 serine threonine 56 phagocytosis 56 signaling pathway 56 virulence genes 56 peroxidase 56 Bt toxin 56 PrP 56 drosophila 56 microRNA molecules 56 biogenesis 56 tropomyosin 56 tyrosine phosphorylation 56 synteny 56 superfamily 56 HOTAIR 56 coding genes 56 molecular markers 56 mRNAs 56 embryogenesis 56 matrix metalloproteinases MMPs 56 Alu elements 56 Mcl 1 56 ovule 56 synthases 56 mRNA transcripts 56 mRNA 56 inflorescence 56 dimers 56 melanogaster 56 thale cress Arabidopsis thaliana 56 CPEB 55 vimentin 55 overexpression 55 roundworm C. elegans 55 histone acetyltransferase 55 metabolic enzymes 55 alpha synuclein 55 Xanthomonas 55 yeast cells 55 lectin 55 serine protease 55 ERBB2 55 H#K#me# 55 HSF1 55 transcriptional regulators 55 serine threonine kinase 55 stomata 55 isogenic 55 mutations 55 6S RNA 55 Xenopus 55 Pol IV 55 mammalian 55 S. pombe 55 histone 55 cytosolic 55 XPB 55 Medicago truncatula 55 RNA polymerases 55 Chlamydomonas reinhardtii 55 Brassica rapa 55 cultured cells 55 X. laevis 55 H#K# [001] 55 phenotype 55 RNA polymerase II 55 phosphorylated 55 thrombospondin 55 Ago2 55 signaling molecule 55 C. neoformans 55 Rap1 55 viral genome 55 hydrogenase 55 yeast genome 55 RNA molecules 55 dimer 55 RNAs 55 stilbene 55 chromatin remodeling complex 55 overexpress 55 F actin 55 hypermethylation 55 RNA transcripts 55 worm C. elegans 55 synuclein 55 Transcriptome 55 uracil 55 Fig. 1A 55 clonally 55 Brassica oleracea 55 nitrogen fixing 55 root nodules 55 mRNA expression 55 Foxp3 55 cohesin 55 TRPV3 55 ESTs 55 baker yeast 55 angiosperms 55 BMP2 55 PAX5 55 ciliated 55 small RNAs 55 gene silencing 55 TIR1 55 tumorigenesis 55 kinase domain 55 coactivator 55 heterologous expression 55 colocalization 55 methyltransferase 55 RNA binding 55 transgenic mice expressing 55 cellulases 55 microsatellite markers 55 protein kinases 55 regulating gene expression 55 5 hydroxymethylcytosine 55 alleles 55 orthologous 55 dsRNA 55 Histone 55 miRNA genes 55 transcription factor 55 Pseudomonas syringae 55 mitochondrial 55 TSC1 55 polypeptide 55 protein phosphorylation 55 V#F mutation 55 coexpression 55 desiccation tolerance 55 coiled coil 55 green alga Chlamydomonas 55 intron 55 posttranslational modifications 55 sequence homology 55 transcriptional regulator 55 E3 ubiquitin ligase 55 D. melanogaster 55 pRb 55 calpain 55 ChIP chip 55 symbiont 55 transmembrane proteins 55 gene sequences 55 homodimer 55 subsp 55 DNA methylation 54 GAPDH 54 Overexpression 54 tetramer 54 histone modification 54 MDCK cells 54 prokaryotic 54 membrane fusion 54 E1A 54 aphid resistant 54 LRP6 54 ribonucleic acids 54 microRNAs 54 mutant proteins 54 diamondback moth 54 somatic embryogenesis 54 tumor suppressor protein 54 glyphosate tolerant 54 coding sequences 54 sequenced genomes 54 mitochondrial genome 54 cellulase 54 epitope 54 forkhead 54 bacterium Escherichia coli 54 androgen receptor AR 54 carcinogenesis 54 ubiquitin ligase 54 phenotypic variation 54 catenin 54 waterhemp 54 Pin1 54 polypeptides 54 disulfide bond 54 cyclins 54 WT1 54 RNA molecule 54 Cry1Ac 54 GTPase 54 nucleotide sequence 54 Brassica napus 54 Dictyostelium 54 cerevisiae 54 angiosperm 54 condensin 54 polyamine 54 signaling pathways 54 Frizzled 54 morphologically 54 transfected 54 mutant alleles 54 miR# 54 centromere 54 Volvox 54 deacetylation 54 homologous recombination 54 lectins 54 protein complexes 54 odorant receptor 54 PcG 54 glycosylated 54 cadherin 54 archaeal 54 homozygosity 54 Hessian fly 54 guanine G 54 synaptogenesis 54 matrix metalloproteinase 54 cytokinin 54 intergenic 54 suppressor gene 54 inflorescences 54 rDNA 54 monocots 54 protein kinase 54 viroid 54 ERK signaling 54 nematode worms 54 glycan 54 polymerases 54 SOD1 54 cell motility 54 glycoprotein 54 hippocampal neurons 54 protein encoded 54 miRNA 54 PON1 54 phospho 54 mutated protein 54 amino acid substitutions 54 ESR1 54 KIAA# 54 amine oxidase 54 eukaryotic cells 54 substrate specificity 54 cellular organelles 54 proline rich 54 HDACs 54 cofilin 54 nucleosome 54 gene 54 subfamilies 54 upregulated 54 P2X 54 GPx 54 TRAF6 54 transferase 54 outer membrane proteins 54 Cry1Ab 54 HCV replication 54 SIRT2 54 Xenopus laevis 54 mRNA molecules 54 polyadenylation 54 glabrata 54 nutrient uptake 54 indel 54 HepG2 cells 54 post translational modifications 54 S#A# [002] 54 spermidine 54 sRNA 54 photosynthetic bacterium 54 progerin 54 TAp# 54 chromosomal DNA 54 splice variants 54 constitutively expressed 54 soybean Glycine max 54 mammalian genomes 54 RNA silencing 54 NF1 gene 54 CXCL# 54 cis regulatory 54 oxidative phosphorylation 54 nitrogenase 54 introns 54 Htt 54 iNOS 54 operons 53 allelopathic 53 demethylase 53 multicellular organisms 53 exonuclease 53 tumor suppressor gene 53 sphingolipid 53 tetraploid 53 chromatin modification 53 QTL mapping 53 MAP kinase 53 tRNAs 53 Nedd4 53 mitochondrial DNA mtDNA 53 subcellular localization 53 transcriptionally 53 neuroligins 53 methylation 53 biotype 53 kinases 53 receptor gene 53 Rab5 53 ovules 53 intracellular signaling 53 cyclin 53 BMP4 53 OCT4 53 micro RNAs 53 KLF4 53 fruitflies 53 introgression 53 morphogenesis 53 keratinocytes 53 BMP signaling 53 cell adhesion molecule 53 IFN gamma 53 tyrosine 53 PIP2 53 chloroplast DNA 53 xylan 53 retrotransposon 53 esterase 53 amyloid fibrils 53 subfamily 53 huntingtin 53 tumor suppressor 53 lacZ 53 circadian clock genes 53 Saccharomyces 53 dynamin 53 AMACR 53 Nrf2 53 WNK1 53 Six3 53 estrogen receptor alpha 53 NFkB 53 synaptotagmin 53 Bcl2 53 zebrafish embryos 53 N acetyltransferase 53 homologous genes 53 FUS1 53 desaturase 53 nucleolin 53 defensins 53 fungal pathogens 53 snapdragon flower 53 focal adhesions 53 E cadherin 53 GRP# 53 histone acetylation 53 mycorrhizal 53 overexpressed 53 HipA 53 bacterial genomes 53 protein synthesis 53 Nup# 53 P. infestans 53 PML RARA 53 metaphase 53 H#K# methylation 53 ploidy 53 midgut 53 Hsp# [001] 53 apoE 53 glyphosate resistant 53 subcellular compartments 53 5 methylcytosine 53 hexose 53 Zea mays 53 Wnt signaling 53 Sox9 53 peroxisomes 53 florigen 53 RUNX3 53 molecular mechanisms 53 Cytoplasmic 53 cytoplasmic 53 SIR2 53 ribonucleotide 53 phosphatases 53 noncoding RNA 53 Skp2 53 TP# gene 53 genotoxic stress 53 reinhardtii 53 kinase gene 53 primary cilium 53 CHD7 53 hyperactivation 53 neural crest 53 non coding RNAs 53 trichomes 53 genomic sequences 53 cytochrome b 53 transfected cells 53 TNF receptors 53 pseudogenes 53 polyamines 53 missense mutations 53 micro RNA 53 ERK1 2 53 MMP9 53 TORC2 53 elegans 53 activin 53 kinase pathway 53 guanosine 53 proteins encoded 53 PDZ domains 53 Wnts 53 cathepsin B 53 p# [001] 53 telomere DNA 53 UTRs 53 mice lacking 53 receptor molecule 53 zebrafish 53 eukaryotic organisms 53 Or#b 53 potent inhibitors 53 brassinosteroid 53 cultured hippocampal neurons 53 intronic 53 Phytophthora sojae 53 photosystem II 53 tocopherol 53 cell signaling pathways 53 gene encoding 53 luteolin 53 major histocompatibility complex 52 paxillin 52 phytate 52 P. syringae 52 bacterial virulence 52 signaling cascade 52 spermatogenesis 52 HMGA2 52 knockout mice 52 X inactivation 52 neuronal differentiation 52 leucine zipper 52 centrioles 52 brassinosteroids 52 transgenic 52 Sanger sequencing 52 FOXO3a 52 RAR beta 52 pea aphid 52 SGK1 52 HLA G 52 RhoA 52 Brassica 52 ERK2 52 PALB2 52 STAT3 52 p# MAPK 52 ChR2 52 MAPK pathway 52 short hairpin RNAs 52 suberin 52 epithelial mesenchymal transition 52 S RNase 52 CagA 52 gene amplification 52 insulin signaling pathway 52 myosin VI 52 perilipin 52 cysteine residues 52 western corn rootworm 52 jasmonic acid 52 microcephalin 52 somatostatin 52 trimers 52 lincRNAs 52 gametophyte 52 heterozygotes 52 viral genomes 52 clades 52 SMN1 52 oxidases 52 oligomeric 52 Methylation 52 caspase 52 photosystems 52 NFκB 52 RANTES 52 parasitoid 52 estrogen receptor 52 CDK4 52 Trichoderma 52 hTERT 52 baker yeast Saccharomyces cerevisiae 52 intergenic regions 52 transduced 52 DNA polymerases 52 telomeric 52 effector proteins 52 #S rDNA 52 GABAergic interneurons 52 soluble proteins 52 differentially regulated 52 constitutively active 52 chromosomal regions 52 CHO cells 52 tyrosine kinases 52 CCR1 52 homology 52 regulated kinase ERK 52 cDNA libraries 52 isoform 52 transmembrane receptor 52 phospholipase 52 proteolytic cleavage 52 cytokinesis 52 cystic fibrosis transmembrane conductance 52 #S rRNA gene 52 amino acid residues 52 TSLP 52 genome 52 stem elongation 52 cDNA microarray 52 IGF 1R 52 TRF1 52 qRT PCR 52 Phylogenetic analysis 52 Chk1 52 transcriptional repression 52 meganuclease 52 plant hormone auxin 52 Hh 52 microarray datasets 52 trypanosomes 52 heritable traits 52 bacterial enzymes 52 polymorphisms 52 acetyl CoA 52 microRNA expression 52 phosphorylate 52 haploid 52 differential gene expression 52 sequenced genome 52 regulate gene expression 52 synapse formation 52 Rac1 52 matrix metalloproteinases 52 prokaryote 52 Drosophila genome 52 Fig. 1C 52 hepatocyte 52 granule cells 52 LRRK2 gene 52 trophoblast cells 52 transcriptionally active 52 cofactor 52 stably expressing 52 keratins 52 sativum 52 IL 1β 52 Phytophthora 52 heterochromatic 52 aminopeptidase 52 mitochondrial genomes 52 heme oxygenase 52 mammalian brain 52 spontaneous mutation 52 immunoprecipitation 52 Rad# 52 Biotype 52 EGFP 52 Fig. 2A 52 monomeric 52 subunits 52 Oct4 52 enzymatic pathway 52 adipogenesis 52 melanocyte 52 EphA2 52 phylogenetically 52 sumoylation 52 MicroRNA 52 mitochondrial genes 52 caveolin 52 SIR2 gene 52 photoperiod 52 p#/CBP 52 phylogenies 52 fluorescently labeled 52 RRM1 52 vegetatively 52 retrotransposons 52 bacterial genome 52 TSP1 52 USP# 52 Bacillus subtilis 52 receptor kinases 52 luminal cells 52 BMAL1 52 differentially expressed genes 52 microRNA molecule 52 exocytosis 52 coding RNA 52 epigenetic mechanisms 52 DNA methyltransferases 52 cytochrome c 52 selenoproteins 52 biosynthetic pathway 52 actin cytoskeleton 52 thymine T 52 Caenorhabditis 52 chromatid 52 noncoding 52 β catenin 52 microRNAs miRNAs 52 Sp1 52 maternally inherited 52 asparagine 52 Polymorphism 52 carboxyl terminal 52 trophoblast 52 ligases 52 Arabidopsis genes 52 gene encodes 52 oncoprotein 52 Akt 52 Phytophthora species 52 mosaicism 52 structural rearrangements 52 miRNA sequences 52 stomatal 52 pleiotropic 52 outcrossing 52 abiotic stress 52 MLL2 52 clonal 52 triptolide 52 Vps# 52 gambiae 52 cholesterol metabolism 52 microarray experiments 52 S1P 52 ERK1 52 cell adhesion 52 oncogenic 52 nucleolar 52 organism genome 52 legume crops 52 moss Physcomitrella patens 52 downregulation 52 cDNA library 52 GSTP1 52 amplicons 52 encodes protein 52 kinase 52 DNA demethylation 52 mutant allele 52 p# mutations 51 beta1 integrin 51 chromatin 51 tumor suppressors 51 globin genes 51 PIK3CA 51 glucan 51 glycosyltransferase 51 DARPP 51 ribozyme 51 Smad3 51 methylation patterns 51 FOXO 51 amino terminal 51 laminin 51 nematode resistant 51 centrosome 51 tRNA genes 51 Germline 51 DLX5 51 aromatase 51 vesicular stomatitis virus 51 cotton bollworm 51 Amino acid 51 DRD2 51 alpha synuclein gene 51 GLI1 51 ribosomal proteins 51 galactose 51 astrocytes 51 Oryza sativa 51 Solanaceae 51 cDNA sequences 51 STAT1 51 FGFR1 51 taxa 51 glutamate receptors 51 phenotypic traits 51 mouse embryo 51 HSCs 51 genotypic 51 HPPD 51 molecule 51 cyclin B1 51 phosphatidylinositol 51 c MYC 51 innate immunity 51 Solexa sequencing 51 fibril 51 chlorophylls 51 GPI anchored 51 Phaseolus vulgaris 51 Cx# [001] 51 MDR1 51 intracellular 51 transcriptome analysis 51 transgenic mice 51 PIP3 51 jasmonate 51 amino acid alanine 51 Mus musculus 51 hsp# 51 polyploids 51 miR #b [002] 51 HtrA2 51 eukaryotic genomes 51 Src 51 Mammalian 51 C#Y 51 sorghum varieties 51 chromatin remodeling 51 FANCD2 51 clusterin 51 adipocyte 51 P. falciparum 51 proteomes 51 miR #a [002] 51 gene expression profiles 51 germline mutations 51 Proteobacteria 51 amino acid sequences 51 Smoothened 51 Cyclin E 51 biosynthetic pathways 51 somatic mutations 51 vertebrate genomes 51 MAP kinase pathway 51 agronomically important 51 Cre recombinase 51 medulloblastomas 51 ErbB4 51 protein kinase C 51 CRISPR 51 Aspergillus niger 51 interneurons 51 kDa protein 51 5 hmC 51 quinone 51 SOD1 protein 51 Th2 51 Supplementary Fig 51 transferrin receptor 51 receptor tyrosine kinase 51 CD1d 51 unicellular organism 51 prokaryotes 51 meristems 51 microglial 51 cysteines 51 mutant p# 51 oligomer 51 allelic variation 51 Glycine max 51 nitrogen fixers 51 spore formation 51 cotyledons 51 KLF# 51 Pikaard 51 annexin V 51 epigenetic 51 germline 51 neuroendocrine 51 LRAT 51 nuclease 51 short hairpin RNA 51 IgG1 51 p# activation 51 genetic recombination 51 subunit 51 upregulation 51 conformational changes 51 genetic alterations 51 Jhdm2a 51 RAS RAF MEK 51 epigenetic modifications 51 MyoD 51 S#K# 51 histone proteins 51 CCR7 51 spectroscopic techniques 51 mammalian fatty acid 51 mesenchymal cells 51 DNMT1 51 beta catenin 51 Notch1 51 Archaea 51 MSH2 51 Prochlorococcus 51 eukaryotes 51 Vielle Calzada 51 chromatin immunoprecipitation